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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7475657   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ppo-u.5   7475657   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ppo-r.4   7475657   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 gma-u.5   GPPS   geranyl-diphosphate synthase 
 mtr-u.5   11423374   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 vvi-u.5   100257234   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ghi-r.1   107943234   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ghi-r.1   107932731   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ghi-r.1   107916920   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 cit-r.1   127900357   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like 
 cit-r.1   102627355   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 sot-r.1   107060335   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like 
 nta-r.1   107788443   heterodimeric geranylgeranyl pyrophosphate synthase small subunit 2, chloroplastic-like 
 nta-r.1   107779444   heterodimeric geranylgeranyl pyrophosphate synthase small subunit 2, chloroplastic-like 

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Top 50 coexpressed genes to 7475657 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7475657 (ppo-m.4 coexpression data)

CoexMap"7475657"


ppoLOC7475657 | Entrez gene ID : 7475657    
Species ppo gma mtr vvi ghi cit sot nta sbi cre ath bra tae sly zma osa bdi hvu bna
Paralog 3 1 1 1 3 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00900 [list] [network] Terpenoid backbone biosynthesis (75 genes)
GO BP
GO:0008299 [list] [network] isoprenoid biosynthetic process  (136 genes)  IEA  
GO CC
GO MF
GO:0004659 [list] [network] prenyltransferase activity  (38 genes)  IEA  
Protein XP_024442001.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 3  (predict for XP_024442001.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_024442001.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7475657
ppo-u.5
for
7475657
ppo-r.4
for
7475657
gma-u.5
for
GPPS
mtr-u.5
for
11423374
vvi-u.5
for
100257234
ghi-r.1
for
107943234
ghi-r.1
for
107932731
ghi-r.1
for
107916920
cit-r.1
for
127900357
cit-r.1
for
102627355
sot-r.1
for
107060335
nta-r.1
for
107788443
nta-r.1
for
107779444


Ortholog ID: 14234
Species ppo gma mtr vvi ghi ghi ghi cit cit sot nta nta
Symbol LOC7475657 GPPS LOC11423374 LOC100257234 LOC107943234 LOC107932731 LOC107916920 LOC127900357 LOC102627355 LOC107060335 LOC107788443 LOC107779444
Function* heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic geranyl-diphosphate synthase heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit 2, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit 2, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 7
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00591 Linoleic acid metabolism 3
ghi00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00591 Linoleic acid metabolism 3
ghi00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 5
sot04016 MAPK signaling pathway - plant 4
sot02010 ABC transporters 2
sot00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00591 Linoleic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7475657 100170743 11423374 100257234 107943234 107932731 107916920 127900357 102627355 107060335 107788443 107779444
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