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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7493496   uncharacterized LOC7493496 
 ppo-u.5   7493496   uncharacterized LOC7493496 
 ppo-r.4   7493496   uncharacterized LOC7493496 
 ppo-u.5   7462486   uncharacterized LOC7462486 
 gma-u.5   AT-1SNBP   HMG I/Y like protein 
 gma-u.5   100788215   atrophin-1 
 gma-u.5   100802941   atherin 
 mtr-u.5   25496745   translation initiation factor IF-2 
 mtr-u.5   11409630   bromodomain-containing protein 4 
 ath-u.5   HON4   winged-helix DNA-binding transcription factor family protein 
 ath-u.5   HON5   high mobility group A5 
 bra-r.6   103871451   histone H1 
 bra-r.6   103868672   uncharacterized LOC103868672 
 bra-r.6   103838863   histone H1 
 vvi-u.5   100853898   histone H1 
 ghi-r.1   107946379   formin-like protein 14 
 ghi-r.1   107920096   SH3 domain-containing protein C23A1.17 
 bna-r.1   111216223   histone H1 
 bna-r.1   111215894   COPII coat assembly protein SEC16-like 
 bna-r.1   111207095   uncharacterized LOC111207095 
 cit-r.1   102616069   histone H1 

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Top 50 coexpressed genes to 7493496 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7493496 (ppo-m.4 coexpression data)

CoexMap"7493496"


ppoLOC7493496 | Entrez gene ID : 7493496    
Species ppo gma mtr ath bra vvi ghi bna cit sbi cre tae sly zma osa sot bdi nta hvu
Paralog 4 3 2 2 3 1 2 3 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045910 [list] [network] negative regulation of DNA recombination  (20 genes)  IEA  
GO:0030261 [list] [network] chromosome condensation  (23 genes)  IEA  
GO:0006334 [list] [network] nucleosome assembly  (57 genes)  IEA  
GO CC
GO:0000786 [list] [network] nucleosome  (76 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (220 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0031492 [list] [network] nucleosomal DNA binding  (15 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (569 genes)  IEA  
Protein XP_002318524.4 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1  (predict for XP_002318524.4)
Subcellular
localization
TargetP
chlo 7,  other 4  (predict for XP_002318524.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7493496
ppo-u.5
for
7493496
ppo-r.4
for
7493496
ppo-u.5
for
7462486
gma-u.5
for
AT-1SNBP
gma-u.5
for
100788215
gma-u.5
for
100802941
mtr-u.5
for
25496745
mtr-u.5
for
11409630
ath-u.5
for
HON4
ath-u.5
for
HON5
bra-r.6
for
103871451
bra-r.6
for
103868672
bra-r.6
for
103838863
vvi-u.5
for
100853898
ghi-r.1
for
107946379
ghi-r.1
for
107920096
bna-r.1
for
111216223
bna-r.1
for
111215894
bna-r.1
for
111207095
cit-r.1
for
102616069


Ortholog ID: 11315
Species ppo ppo gma gma gma mtr mtr ath ath bra bra bra vvi ghi ghi bna bna bna cit
Symbol LOC7493496 LOC7462486 AT-1SNBP LOC100788215 LOC100802941 LOC25496745 LOC11409630 HON4 HON5 LOC103871451 LOC103868672 LOC103838863 LOC100853898 LOC107946379 LOC107920096 LOC111216223 LOC111215894 LOC106389056 LOC102616069
Function* uncharacterized LOC7493496 uncharacterized LOC7462486 HMG I/Y like protein atrophin-1 atherin translation initiation factor IF-2 bromodomain-containing protein 4 winged-helix DNA-binding transcription factor family protein high mobility group A5 histone H1 uncharacterized LOC103868672 histone H1 histone H1 formin-like protein 14 SH3 domain-containing protein C23A1.17 histone H1 COPII coat assembly protein SEC16-like histone H1 histone H1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03018 RNA degradation 3
ppo03013 Nucleocytoplasmic transport 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 4
gma00513 Various types of N-glycan biosynthesis 4
gma04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03083 Polycomb repressive complex 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
cit03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7493496 7462486 547676 100788215 100802941 25496745 11409630 821328 841283 103871451 103868672 103838863 100853898 107946379 107920096 111216223 111215894 106389056 102616069
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