ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-r.4	18096176	uncharacterized LOC18096176
ppo-u.5	18096176	uncharacterized LOC18096176
ppo-u.5	7469216	uncharacterized LOC7469216
gma-u.5	100815405	ubiquitin carboxyl-terminal hydrolase MINDY-3
gma-u.5	100813222	ubiquitin carboxyl-terminal hydrolase MINDY-3
mtr-u.5	11417848	ubiquitin carboxyl-terminal hydrolase MINDY-3
ath-u.5	AT1G43690	ubiquitin interaction motif-containing protein
bra-r.6	103847704	ubiquitin carboxyl-terminal hydrolase MINDY-3
vvi-u.5	100258904	uncharacterized LOC100258904
ghi-r.1	107957525	ubiquitin carboxyl-terminal hydrolase MINDY-3
ghi-r.1	121229529	ubiquitin carboxyl-terminal hydrolase MINDY-3
ghi-r.1	107914112	ubiquitin carboxyl-terminal hydrolase MINDY-3
bna-r.1	106410722	ubiquitin carboxyl-terminal hydrolase MINDY-3
bna-r.1	106424785	ubiquitin carboxyl-terminal hydrolase MINDY-3
cit-r.1	102611276	uncharacterized LOC102611276
sly-u.5	101265818	uncharacterized LOC101265818
sot-r.1	102589602	protein FAM188A
nta-r.1	107817612	uncharacterized LOC107817612
nta-r.1	107807365	uncharacterized LOC107807365
osa-u.5	4335833	uncharacterized LOC4335833
zma-u.5	103641635	ubiquitin carboxyl-terminal hydrolase MINDY-3
zma-u.5	100279307	uncharacterized LOC100279307
tae-r.2	123189196	ubiquitin carboxyl-terminal hydrolase MINDY-3
tae-r.2	123053282	ubiquitin carboxyl-terminal hydrolase MINDY-3
tae-r.2	123045455	ubiquitin carboxyl-terminal hydrolase MINDY-3
hvu-r.1	123426705	ubiquitin carboxyl-terminal hydrolase MINDY-3
sbi-r.1	8073022	ubiquitin carboxyl-terminal hydrolase MINDY-3
bdi-r.1	100821161	ubiquitin carboxyl-terminal hydrolase MINDY-3
cre-r.1	CHLRE_06g286600v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0071108 [list] [network] protein K48-linked deubiquitination

(8 genes)

IEA

GO CC

GO MF

GO:1990380 [list] [network] K48-linked deubiquitinase activity	(4 genes)	IEA
GO:0004843 [list] [network] cysteine-type deubiquitinase activity	(76 genes)	IEA

Protein

XP_006386311.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, chlo 1, mito 1, cysk 1, chlo_mito 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_006386311.2)

Subcellular
localization
TargetP

other 8, chlo 4

(predict for XP_006386311.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-r.4 for 18096176	ppo-u.5 for 18096176	ppo-u.5 for 7469216	gma-u.5 for 100815405	gma-u.5 for 100813222	mtr-u.5 for 11417848	ath-u.5 for AT1G43690	bra-r.6 for 103847704	vvi-u.5 for 100258904	ghi-r.1 for 107957525	ghi-r.1 for 121229529	ghi-r.1 for 107914112	bna-r.1 for 106410722	bna-r.1 for 106424785	cit-r.1 for 102611276	sly-u.5 for 101265818	sot-r.1 for 102589602	nta-r.1 for 107817612	nta-r.1 for 107807365	osa-u.5 for 4335833	zma-u.5 for 103641635	zma-u.5 for 100279307	tae-r.2 for 123189196	tae-r.2 for 123053282	tae-r.2 for 123045455	hvu-r.1 for 123426705	sbi-r.1 for 8073022	bdi-r.1 for 100821161	cre-r.1 for CHLRE_06g286600v5

Ortholog

Ortholog ID: 7832

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC18096176

uncharacterized LOC7469216

ubiquitin carboxyl-terminal hydrolase MINDY-3

ubiquitin interaction motif-containing protein

ubiquitin carboxyl-terminal hydrolase MINDY-3

uncharacterized LOC100258904

ubiquitin carboxyl-terminal hydrolase MINDY-3

uncharacterized LOC102611276

uncharacterized LOC101265818

protein FAM188A

uncharacterized LOC107817612

uncharacterized LOC107807365

uncharacterized LOC4335833

ubiquitin carboxyl-terminal hydrolase MINDY-3

uncharacterized LOC100279307

ubiquitin carboxyl-terminal hydrolase MINDY-3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo04144	Endocytosis	2
ppo05100	Bacterial invasion of epithelial cells	2
ppo03015	mRNA surveillance pathway	2
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo04144	Endocytosis	2
ppo05100	Bacterial invasion of epithelial cells	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2
ath03015	mRNA surveillance pathway	2
ath03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	2
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00590	Arachidonic acid metabolism	2
ghi00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00650	Butanoate metabolism	2
ghi00590	Arachidonic acid metabolism	2
ghi00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	3
ghi00590	Arachidonic acid metabolism	2
ghi00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	6
bna04144	Endocytosis	3
bna03015	mRNA surveillance pathway	2
bna04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	6
bna04141	Protein processing in endoplasmic reticulum	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03250	Viral life cycle - HIV-1	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	4
zma03015	mRNA surveillance pathway	3
zma04136	Autophagy - other	2
zma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3
hvu03013	Nucleocytoplasmic transport	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2
sbi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

18096176

7469216

100815405

100813222

11417848

840956

103847704

100258904

107957525

107914112

107905237

106410722

106424785

102611276

101265818

102589602

107817612

107807365

4335833

103641635

100279307

123189196

123053282

123045455

123426705

8073022

100821161

5721018

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 18096176 (ppo-r.4 coexpression data)

Top 50 enrichment test to 18096176 (ppo-r.4 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	1	1	1	1	3	2	1	1	1	2	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18096176 (ppo-r.4 coexpression data)

Top 50 enrichment test to 18096176 (ppo-r.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**