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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-r.4   7458478   putative pentatricopeptide repeat-containing protein At4g17915 
 ppo-u.5   7458478   putative pentatricopeptide repeat-containing protein At4g17915 
 gma-u.5   100808229   putative pentatricopeptide repeat-containing protein At4g17915 
 mtr-u.5   11445614   putative pentatricopeptide repeat-containing protein At4g17915 
 ath-u.5   AT5G46680   Pentatricopeptide repeat (PPR-like) superfamily protein 
 bra-r.6   103860954   putative pentatricopeptide repeat-containing protein At4g17915 
 bra-r.6   103853732   pentatricopeptide repeat-containing protein At5g46680 
 vvi-u.5   100257981   putative pentatricopeptide repeat-containing protein At4g17915 
 ghi-r.1   107918514   putative pentatricopeptide repeat-containing protein At4g17915 
 ghi-r.1   107936369   putative ABC transporter C family member 15 
 bna-r.1   106440207   putative pentatricopeptide repeat-containing protein At4g17915 
 cit-r.1   102607642   putative pentatricopeptide repeat-containing protein At4g17915 
 sly-u.5   101263177   putative pentatricopeptide repeat-containing protein At4g17915 
 sly-u.5   101255901   putative pentatricopeptide repeat-containing protein At4g17915 
 sot-r.1   102585308   putative pentatricopeptide repeat-containing protein At4g17915 
 sot-r.1   102605526   putative pentatricopeptide repeat-containing protein At4g17915 
 nta-r.1   107821808   uncharacterized LOC107821808 
 nta-r.1   107785781   uncharacterized LOC107785781 
 nta-r.1   107773423   uncharacterized LOC107773423 
 osa-u.5   4330986   putative pentatricopeptide repeat-containing protein At4g17915 
 zma-u.5   100384682   Pentatricopeptide repeat-containing protein 
 tae-r.2   123086715   putative pentatricopeptide repeat-containing protein At4g17915 
 hvu-r.1   123447961   putative pentatricopeptide repeat-containing protein At4g17915 
 sbi-r.1   8079715   putative pentatricopeptide repeat-containing protein At4g17915 
 bdi-r.1   100839561   putative pentatricopeptide repeat-containing protein At4g17915 

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Top 50 coexpressed genes to 7458478 (ppo-r.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7458478 (ppo-r.4 coexpression data)

CoexMap"7458478"


ppoLOC7458478 | Entrez gene ID : 7458478    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 2 1 2 1 1 2 2 3 1 1 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024458830.2 [sequence] [blastp]
XP_024458831.2 [sequence] [blastp]
XP_052309450.1 [sequence] [blastp]
XP_052309451.1 [sequence] [blastp]
XP_052309452.1 [sequence] [blastp]
XP_052309453.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_024458830.2)
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_024458831.2)
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_052309450.1)
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_052309451.1)
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_052309452.1)
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_052309453.1)
Subcellular
localization
TargetP
scret 4  (predict for XP_024458830.2)
scret 4  (predict for XP_024458831.2)
scret 4  (predict for XP_052309450.1)
scret 4  (predict for XP_052309451.1)
scret 4  (predict for XP_052309452.1)
scret 4  (predict for XP_052309453.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-r.4
for
7458478
ppo-u.5
for
7458478
gma-u.5
for
100808229
mtr-u.5
for
11445614
ath-u.5
for
AT5G46680
bra-r.6
for
103860954
bra-r.6
for
103853732
vvi-u.5
for
100257981
ghi-r.1
for
107918514
ghi-r.1
for
107936369
bna-r.1
for
106440207
cit-r.1
for
102607642
sly-u.5
for
101263177
sly-u.5
for
101255901
sot-r.1
for
102585308
sot-r.1
for
102605526
nta-r.1
for
107821808
nta-r.1
for
107785781
nta-r.1
for
107773423
osa-u.5
for
4330986
zma-u.5
for
100384682
tae-r.2
for
123086715
hvu-r.1
for
123447961
sbi-r.1
for
8079715
bdi-r.1
for
100839561


Ortholog ID: 7368
Species ppo gma mtr ath bra bra vvi ghi ghi bna cit sly sly sot sot nta nta nta osa zma tae hvu sbi bdi
Symbol LOC7458478 LOC100808229 LOC11445614 AT5G46680 LOC103860954 LOC103853732 LOC100257981 LOC107918514 LOC107936369 LOC106440207 LOC102607642 LOC101263177 LOC101255901 LOC102585308 LOC102605526 LOC107785781 LOC107773423 LOC107817333 LOC4330986 LOC100384682 LOC123086715 LOC123447961 LOC8079715 LOC100839561
Function* putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915 Pentatricopeptide repeat (PPR-like) superfamily protein putative pentatricopeptide repeat-containing protein At4g17915 pentatricopeptide repeat-containing protein At5g46680 putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915 putative ABC transporter C family member 15 putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915 uncharacterized LOC107785781 uncharacterized LOC107773423 uncharacterized LOC107817333 putative pentatricopeptide repeat-containing protein At4g17915 Pentatricopeptide repeat-containing protein putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915 putative pentatricopeptide repeat-containing protein At4g17915
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7458478 100808229 11445614 834711 103860954 103853732 100257981 107918514 107936369 106440207 102607642 101263177 101255901 102585308 102605526 107785781 107773423 107817333 4330986 100384682 123086715 123447961 8079715 100839561
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