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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18094897   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 ppo-r.4   18094897   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 ppo-u.5   7478135   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 gma-u.5   100795613   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 gma-u.5   100794898   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 mtr-u.5   25483514   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 ath-u.5   PIE1   SNF2 domain-containing protein / helicase domain-containing protein 
 bra-r.6   103870222   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 vvi-u.5   100248703   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 ghi-r.1   107928336   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 ghi-r.1   107909111   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 bna-r.1   106389841   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 bna-r.1   106452362   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 cit-r.1   102629545   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 sly-u.5   101248082   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 sot-r.1   102593766   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 nta-r.1   107780070   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 nta-r.1   107805182   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 osa-u.5   4330371   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 zma-u.5   103653935   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 zma-u.5   100216988   uncharacterized LOC100216988 
 tae-r.2   123163189   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 tae-r.2   123149744   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 tae-r.2   123170204   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 hvu-r.1   123407774   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 sbi-r.1   8073897   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 bdi-r.1   100821638   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 bdi-r.1   100831848   protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 
 cre-r.1   CHLRE_14g618860v5   uncharacterized protein 

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Top 50 coexpressed genes to 18094897 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18094897 (ppo-u.5 coexpression data)

CoexMap"18094897"


ppoLOC18094897 | Entrez gene ID : 18094897    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 1 1 1 1 2 2 1 1 1 2 1 2 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03082 [list] [network] ATP-dependent chromatin remodeling (85 genes)
GO BP
GO CC
GO:0000812 [list] [network] Swr1 complex  (10 genes)  IEA  
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (53 genes)  IEA  
GO:0042393 [list] [network] histone binding  (71 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (550 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002298195.3 [sequence] [blastp]
XP_024449404.1 [sequence] [blastp]
XP_024449405.1 [sequence] [blastp]
XP_024449406.1 [sequence] [blastp]
XP_024449407.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1,  plas 1,  pero 1,  cysk_nucl 1  (predict for XP_002298195.3)
cyto 5,  nucl 4,  cysk 1  (predict for XP_024449404.1)
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_024449405.1)
cyto 5,  nucl 4,  cysk 1  (predict for XP_024449406.1)
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_024449407.1)
Subcellular
localization
TargetP
scret 5  (predict for XP_002298195.3)
chlo 3,  other 3,  mito 3  (predict for XP_024449404.1)
chlo 3,  other 3,  mito 3  (predict for XP_024449405.1)
chlo 3,  other 3,  mito 3  (predict for XP_024449406.1)
chlo 3,  other 3,  mito 3  (predict for XP_024449407.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18094897
ppo-r.4
for
18094897
ppo-u.5
for
7478135
gma-u.5
for
100795613
gma-u.5
for
100794898
mtr-u.5
for
25483514
ath-u.5
for
PIE1
bra-r.6
for
103870222
vvi-u.5
for
100248703
ghi-r.1
for
107928336
ghi-r.1
for
107909111
bna-r.1
for
106389841
bna-r.1
for
106452362
cit-r.1
for
102629545
sly-u.5
for
101248082
sot-r.1
for
102593766
nta-r.1
for
107780070
nta-r.1
for
107805182
osa-u.5
for
4330371
zma-u.5
for
103653935
zma-u.5
for
100216988
tae-r.2
for
123163189
tae-r.2
for
123149744
tae-r.2
for
123170204
hvu-r.1
for
123407774
sbi-r.1
for
8073897
bdi-r.1
for
100821638
bdi-r.1
for
100831848
cre-r.1
for
CHLRE_14g618860v5


Ortholog ID: 8454
Species ppo ppo gma gma mtr ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma zma tae tae tae hvu sbi bdi bdi cre
Symbol LOC18094897 LOC7478135 LOC100795613 LOC100794898 LOC25483514 PIE1 LOC103870222 LOC100248703 LOC107928336 LOC107909111 LOC106389841 LOC106452362 LOC102629545 LOC101248082 LOC102593766 LOC107780070 LOC107805182 LOC4330371 LOC103653935 LOC100216988 LOC123163189 LOC123149744 LOC123170204 LOC123407774 LOC8073897 LOC100821638 LOC100831848 CHLRE_14g618860v5
Function* protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 SNF2 domain-containing protein / helicase domain-containing protein protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 uncharacterized LOC100216988 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 4
gma03040 Spliceosome 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03082 ATP-dependent chromatin remodeling 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly03013 Nucleocytoplasmic transport 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
nta03015 mRNA surveillance pathway 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 4
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03082 ATP-dependent chromatin remodeling 2
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18094897 7478135 100795613 100794898 25483514 820463 103870222 100248703 107928336 107909111 106389841 106452362 102629545 101248082 102593766 107780070 107805182 4330371 103653935 100216988 123163189 123149744 123170204 123407774 8073897 100821638 100831848 5715866
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