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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7492020   polyadenylate-binding protein 2 
 ppo-r.4   7492020   polyadenylate-binding protein 2 
 ppo-m.4   7492020   polyadenylate-binding protein 2 
 ppo-u.5   18103845   polyadenylate-binding protein 1 
 ppo-u.5   7466796   polyadenylate-binding protein 3 
 ppo-u.5   7456678   polyadenylate-binding protein 1 
 gma-u.5   100527139   RNA recognition motif-containing protein 
 gma-u.5   100809403   polyadenylate-binding protein 2 
 gma-u.5   100791351   polyadenylate-binding protein 2-like 
 mtr-u.5   11433289   polyadenylate-binding protein 1 
 mtr-u.5   25501878   polyadenylate-binding protein 2 
 ath-u.5   AT5G10350   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   PABN1   polyadenylate-binding protein 1 
 ath-u.5   AT5G65260   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103873956   polyadenylate-binding protein 2 
 bra-r.6   103855290   polyadenylate-binding protein 2 
 vvi-u.5   100258174   polyadenylate-binding protein 2 
 vvi-u.5   100242522   polyadenylate-binding protein 2 
 vvi-u.5   100855316   polyadenylate-binding protein 2 
 ghi-r.1   107955099   polyadenylate-binding protein 1 
 ghi-r.1   107920414   polyadenylate-binding protein 2 
 ghi-r.1   107929069   polyadenylate-binding protein 2 
 bna-r.1   106382880   polyadenylate-binding protein 2 
 bna-r.1   106375659   polyadenylate-binding protein 1 
 bna-r.1   106347990   polyadenylate-binding protein 2 
 cit-r.1   102577996   poly(A)-binding protein 1 
 cit-r.1   102620020   polyadenylate-binding protein 2 
 cit-r.1   102625039   polyadenylate-binding protein 2-like 
 sly-u.5   101268437   polyadenylate-binding protein 2 
 sly-u.5   101247002   polyadenylate-binding protein 1 
 sly-u.5   101248758   polyadenylate-binding protein 1-like 
 sot-r.1   102596687   polyadenylate-binding protein 1-like 
 sot-r.1   102591574   polyadenylate-binding protein 2-like 
 sot-r.1   102595428   polyadenylate-binding protein 2-like 
 nta-r.1   107813382   polyadenylate-binding protein 1-like 
 nta-r.1   107815674   polyadenylate-binding protein 1 
 nta-r.1   107821926   polyadenylate-binding protein 2 
 osa-u.5   4340509   polyadenylate-binding protein 2 
 osa-u.5   4330785   polyadenylate-binding protein 2 
 zma-u.5   103640921   polyadenylate-binding protein 3 
 zma-u.5   103638439   polyadenylate-binding protein 2 
 zma-u.5   103628586   polyadenylate-binding protein 2 
 tae-r.2   123128452   polyadenylate-binding protein 2 
 hvu-r.1   123413657   polyadenylate-binding protein 2-like 
 hvu-r.1   123405955   polyadenylate-binding protein 2-like 
 sbi-r.1   8058063   polyadenylate-binding protein 1 
 sbi-r.1   8065487   polyadenylate-binding protein 2 
 sbi-r.1   110434511   polyadenylate-binding protein 2-like 
 bdi-r.1   100843138   polyadenylate-binding protein 2 
 bdi-r.1   100844180   polyadenylate-binding protein 2 
 cre-r.1   CHLRE_06g274500v5   uncharacterized protein 

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Top 50 coexpressed genes to 7492020 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7492020 (ppo-u.5 coexpression data)

CoexMap"7492020"


ppoLOC7492020 | Entrez gene ID : 7492020    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 6 3 2 3 2 3 3 3 3 3 3 3 2 3 1 2 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03015 [list] [network] mRNA surveillance pathway (164 genes)
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_002300187.3 [sequence] [blastp]
XP_024442178.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 1,  cyto 1,  mito 1,  plas 1,  extr 1,  pero 1,  cyto_pero 1,  mito_plas 1,  cyto_plas 1  (predict for XP_002300187.3)
nucl 6,  mito 2,  chlo 1,  plas 1,  pero 1  (predict for XP_024442178.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002300187.3)
other 9  (predict for XP_024442178.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7492020
ppo-r.4
for
7492020
ppo-m.4
for
7492020
ppo-u.5
for
18103845
ppo-u.5
for
7466796
ppo-u.5
for
7456678
gma-u.5
for
100527139
gma-u.5
for
100809403
gma-u.5
for
100791351
mtr-u.5
for
11433289
mtr-u.5
for
25501878
ath-u.5
for
AT5G10350
ath-u.5
for
PABN1
ath-u.5
for
AT5G65260
bra-r.6
for
103873956
bra-r.6
for
103855290
vvi-u.5
for
100258174
vvi-u.5
for
100242522
vvi-u.5
for
100855316
ghi-r.1
for
107955099
ghi-r.1
for
107920414
ghi-r.1
for
107929069
bna-r.1
for
106382880
bna-r.1
for
106375659
bna-r.1
for
106347990
cit-r.1
for
102577996
cit-r.1
for
102620020
cit-r.1
for
102625039
sly-u.5
for
101268437
sly-u.5
for
101247002
sly-u.5
for
101248758
sot-r.1
for
102596687
sot-r.1
for
102591574
sot-r.1
for
102595428
nta-r.1
for
107813382
nta-r.1
for
107815674
nta-r.1
for
107821926
osa-u.5
for
4340509
osa-u.5
for
4330785
zma-u.5
for
103640921
zma-u.5
for
103638439
zma-u.5
for
103628586
tae-r.2
for
123128452
hvu-r.1
for
123413657
hvu-r.1
for
123405955
sbi-r.1
for
8058063
sbi-r.1
for
8065487
sbi-r.1
for
110434511
bdi-r.1
for
100843138
bdi-r.1
for
100844180
cre-r.1
for
CHLRE_06g274500v5


Ortholog ID: 886
Species ppo ppo ppo gma gma gma mtr mtr mtr ath ath ath bra bra vvi vvi vvi ghi ghi ghi bna bna bna cit cit cit sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae hvu hvu sbi sbi sbi bdi bdi cre
Symbol LOC18103845 LOC7466796 LOC7496613 LOC100527139 LOC100791351 LOC100784473 LOC11433289 LOC25484152 LOC11406230 AT5G10350 PABN1 AT5G65260 LOC103857200 LOC103864862 LOC100258174 LOC100242522 LOC100855316 LOC107920414 LOC121225729 LOC107933492 LOC106382880 LOC106426920 LOC125585440 LOC102577996 LOC102620020 LOC102625039 LOC101247002 LOC104646444 LOC101260498 LOC102596687 LOC102591574 LOC102604568 LOC107813382 LOC107766555 LOC107807053 LOC4340509 LOC4330785 LOC100285979 LOC100282115 LOC100194063 LOC123157058 LOC123138329 LOC123413657 LOC123405955 LOC8058063 LOC8065487 LOC110434511 LOC100843138 LOC100844180 CHLRE_06g274500v5
Function* polyadenylate-binding protein 1 polyadenylate-binding protein 3 polyadenylate-binding protein 2 RNA recognition motif-containing protein polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2 RNA-binding (RRM/RBD/RNP motifs) family protein polyadenylate-binding protein 1 RNA-binding (RRM/RBD/RNP motifs) family protein polyadenylate-binding protein 1 polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 1-like poly(A)-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 1 polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 1-like polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 1-like polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 uncharacterized LOC100194063 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 2 polyadenylate-binding protein 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00071 Fatty acid degradation 2
gma00350 Tyrosine metabolism 2
gma00620 Pyruvate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03040 Spliceosome 5
mtr03420 Nucleotide excision repair 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath04141 Protein processing in endoplasmic reticulum 3
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00190 Oxidative phosphorylation 3
ath04144 Endocytosis 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 3
bra03008 Ribosome biogenesis in eukaryotes 3
bra00730 Thiamine metabolism 2
bra01232 Nucleotide metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03015 mRNA surveillance pathway 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03060 Protein export 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03060 Protein export 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
bna03250 Viral life cycle - HIV-1 3
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
bna03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly04120 Ubiquitin mediated proteolysis 3
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 5
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta00600 Sphingolipid metabolism 2
nta04382 Cornified envelope formation 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 9
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03040 Spliceosome 3
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03050 Proteasome 5
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 4
hvu03040 Spliceosome 3
hvu03083 Polycomb repressive complex 3
hvu04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 5
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi04144 Endocytosis 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03050 Proteasome 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 5
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 3
bdi03040 Spliceosome 3
bdi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03015 mRNA surveillance pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18103845 7466796 7496613 100527139 100791351 100784473 11433289 25484152 11406230 830899 835186 836651 103857200 103864862 100258174 100242522 100855316 107920414 121225729 107933492 106382880 106426920 125585440 102577996 102620020 102625039 101247002 104646444 101260498 102596687 102591574 102604568 107813382 107766555 107807053 4340509 4330785 100285979 100282115 100194063 123157058 123138329 123413657 123405955 8058063 8065487 110434511 100843138 100844180 5721773
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