ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100843138	polyadenylate-binding protein 2
osa-u.5	4340509	polyadenylate-binding protein 2
osa-u.5	4330785	polyadenylate-binding protein 2
zma-u.5	103640921	polyadenylate-binding protein 3
zma-u.5	103638439	polyadenylate-binding protein 2
zma-u.5	100285979	polyadenylate-binding protein 2
ath-u.5	AT5G10350	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	PABN1	polyadenylate-binding protein 1
ath-u.5	AT5G65260	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100527545	RRM domain-containing protein
gma-u.5	100527139	RNA recognition motif-containing protein
gma-u.5	100791351	polyadenylate-binding protein 2-like
sly-u.5	101248758	polyadenylate-binding protein 1-like
sly-u.5	101268437	polyadenylate-binding protein 2
sly-u.5	104646444	polyadenylate-binding protein 1
vvi-u.5	100855316	polyadenylate-binding protein 2
vvi-u.5	100258174	polyadenylate-binding protein 2
vvi-u.5	100242522	polyadenylate-binding protein 2
ppo-u.5	7496613	polyadenylate-binding protein 2
ppo-u.5	7492020	polyadenylate-binding protein 2
ppo-u.5	7466796	polyadenylate-binding protein 3
mtr-u.5	25484152	polyadenylate-binding protein 2
mtr-u.5	11406230	polyadenylate-binding protein 2
mtr-u.5	11433289	polyadenylate-binding protein 1

Top 50 coexpressed genes to 100843138 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100843138 (bdi-r.1 coexpression data)

CoexMap"100843138"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi03015 [list] [network] mRNA surveillance pathway (130 genes)

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1239 genes)

IEA

Protein

XP_003564078.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, chlo 1, plas 1, cyto_pero 1, cyto_E.R. 1

(predict for XP_003564078.1)

Subcellular
localization
TargetP

other 9

(predict for XP_003564078.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100843138	osa-u.5 for 4340509	osa-u.5 for 4330785	zma-u.5 for 103640921	zma-u.5 for 103638439	zma-u.5 for 100285979	ath-u.5 for AT5G10350	ath-u.5 for PABN1	ath-u.5 for AT5G65260	gma-u.5 for 100527545	gma-u.5 for 100527139	gma-u.5 for 100791351	sly-u.5 for 101248758	sly-u.5 for 101268437	sly-u.5 for 104646444	vvi-u.5 for 100855316	vvi-u.5 for 100258174	vvi-u.5 for 100242522	ppo-u.5 for 7496613	ppo-u.5 for 7492020	ppo-u.5 for 7466796	mtr-u.5 for 25484152	mtr-u.5 for 11406230	mtr-u.5 for 11433289

Ortholog

Ortholog ID: 886

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

PABN1

Function^*

polyadenylate-binding protein 2

polyadenylate-binding protein 2-like

polyadenylate-binding protein 2

uncharacterized LOC100194063

polyadenylate-binding protein 2

polyadenylate-binding protein 2-like

RNA-binding (RRM/RBD/RNP motifs) family protein

polyadenylate-binding protein 1

RNA recognition motif-containing protein

polyadenylate-binding protein 2-like

polyadenylate-binding protein 1

polyadenylate-binding protein 2

polyadenylate-binding protein 1

polyadenylate-binding protein 3

polyadenylate-binding protein 1

polyadenylate-binding protein 2

polyadenylate-binding protein 1-like

polyadenylate-binding protein 2-like

polyadenylate-binding protein 1-like

polyadenylate-binding protein 2-like

poly(A)-binding protein 1

polyadenylate-binding protein 1-like

polyadenylate-binding protein 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	5
bdi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	3
bdi03040	Spliceosome	3
bdi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03050	Proteasome	5
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	9
osa03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma03040	Spliceosome	3
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	6
sbi04144	Endocytosis	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	3
sbi03050	Proteasome	2
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath00190	Oxidative phosphorylation	3
ath04144	Endocytosis	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	9
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03015	mRNA surveillance pathway	2
gma00970	Aminoacyl-tRNA biosynthesis	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	8
sly04120	Ubiquitin mediated proteolysis	3
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00230	Purine metabolism	3
bra03008	Ribosome biogenesis in eukaryotes	3
bra00730	Thiamine metabolism	2
bra01232	Nucleotide metabolism	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	9
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5
vvi03015	mRNA surveillance pathway	3
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	8
mtr03040	Spliceosome	5
mtr03420	Nucleotide excision repair	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	5
ghi03015	mRNA surveillance pathway	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi03060	Protein export	2
ghi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4
ghi03015	mRNA surveillance pathway	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi03060	Protein export	2
ghi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	7
bna03250	Viral life cycle - HIV-1	3
bna03060	Protein export	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	6
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	5
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta00600	Sphingolipid metabolism	2
nta04382	Cornified envelope formation	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	11
cre03015	mRNA surveillance pathway	3

Expression

Expression pattern

Entrez Gene ID^*

100843138

100844180

123138329

123157058

123405955

4340509

4330785

100282115

100194063

8065487

110434511

836651

835186

100527139

100791351

101247002

104646444

103864862

103857200

100855316

100242522

18103845

7466796

11433289

25484152

121225729

107920414

106382880

125585440

102604568

102596687

102625039

102577996

107813382

107766555

5721773

The preparation time of this page was 0.1 [sec].


Species	bdi	osa	zma	ath	gma	sly	vvi	ppo	mtr	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100843138 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100843138 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**