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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g274500v5   uncharacterized protein 
 ath-u.5   AT5G10350   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   PABN1   polyadenylate-binding protein 1 
 ath-u.5   AT5G65260   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100784473   polyadenylate-binding protein 2-like 
 gma-u.5   100527545   RRM domain-containing protein 
 gma-u.5   100809403   polyadenylate-binding protein 2 
 sly-u.5   101248758   polyadenylate-binding protein 1-like 
 sly-u.5   101268437   polyadenylate-binding protein 2 
 sly-u.5   104646444   polyadenylate-binding protein 1 
 osa-u.5   4340509   polyadenylate-binding protein 2 
 osa-u.5   4330785   polyadenylate-binding protein 2 
 zma-u.5   100283584   polyadenylate-binding protein 2 
 zma-u.5   100285979   polyadenylate-binding protein 2 
 zma-u.5   100282115   polyadenylate-binding protein 2 
 vvi-u.5   100855316   polyadenylate-binding protein 2 
 vvi-u.5   100258174   polyadenylate-binding protein 2 
 vvi-u.5   100242522   polyadenylate-binding protein 2 
 ppo-u.5   7455196   polyadenylate-binding protein 2 
 ppo-u.5   7496613   polyadenylate-binding protein 2 
 ppo-u.5   18103845   polyadenylate-binding protein 1 
 mtr-u.5   25501878   polyadenylate-binding protein 2 
 mtr-u.5   11433289   polyadenylate-binding protein 1 

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Top 50 coexpressed genes to CHLRE_06g274500v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g274500v5 (cre-r.1 coexpression data)

CoexMap"5721773"


creCHLRE_06g274500v5 | Entrez gene ID : 5721773    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 2 3 3 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03015 [list] [network] mRNA surveillance pathway (40 genes)
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042923696.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_042923696.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042923696.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g274500v5

.
ath-u.5
for
AT5G10350

.
ath-u.5
for
PABN1

.
ath-u.5
for
AT5G65260

.
gma-u.5
for
100784473

.
gma-u.5
for
100527545

.
gma-u.5
for
100809403

.
sly-u.5
for
101248758

.
sly-u.5
for
101268437

.
sly-u.5
for
104646444

.
osa-u.5
for
4340509

.
osa-u.5
for
4330785

.
zma-u.5
for
100283584

.
zma-u.5
for
100285979

.
zma-u.5
for
100282115

.
vvi-u.5
for
100855316

.
vvi-u.5
for
100258174

.
vvi-u.5
for
100242522

.
ppo-u.5
for
7455196

.
ppo-u.5
for
7496613

.
ppo-u.5
for
18103845

.
mtr-u.5
for
25501878

.
mtr-u.5
for
11433289

.


Ortholog ID: 886
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT5G65260 PABN1 LOC100527139 LOC100791351 LOC101247002 LOC104646444 LOC4340509 LOC4330785 LOC100282115 LOC100194063 LOC103864862 LOC103857200 LOC100855316 LOC100242522 LOC18103845 LOC7466796 LOC11433289 LOC25484152 LOC123138329 LOC123157058 LOC123405955 LOC121225729 LOC107920414 LOC106382880 LOC125585440 CHLRE_06g274500v5 LOC8065487 LOC110434511 LOC102604568 LOC102596687 LOC102625039 LOC102577996 LOC100843138 LOC100844180 LOC107813382 LOC107766555
Function* RNA-binding (RRM/RBD/RNP motifs) family protein polyadenylate-binding protein 1 RNA recognition motif-containing protein polyadenylate-binding protein 2-like polyadenylate-binding protein 1 polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 uncharacterized LOC100194063 polyadenylate-binding protein 1 polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 1 polyadenylate-binding protein 3 polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 1-like uncharacterized protein polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 1-like polyadenylate-binding protein 2-like poly(A)-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 1-like polyadenylate-binding protein 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00190 Oxidative phosphorylation 3
ath04144 Endocytosis 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly04120 Ubiquitin mediated proteolysis 3
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 9
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03040 Spliceosome 3
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 3
bra03008 Ribosome biogenesis in eukaryotes 3
bra00730 Thiamine metabolism 2
bra01232 Nucleotide metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03015 mRNA surveillance pathway 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03040 Spliceosome 5
mtr03420 Nucleotide excision repair 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03050 Proteasome 5
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03060 Protein export 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03060 Protein export 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
bna03250 Viral life cycle - HIV-1 3
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi04144 Endocytosis 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03050 Proteasome 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 5
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 3
bdi03040 Spliceosome 3
bdi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta00600 Sphingolipid metabolism 2
nta04382 Cornified envelope formation 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836651 835186 100527139 100791351 101247002 104646444 4340509 4330785 100282115 100194063 103864862 103857200 100855316 100242522 18103845 7466796 11433289 25484152 123138329 123157058 123405955 121225729 107920414 106382880 125585440 5721773 8065487 110434511 102604568 102596687 102625039 102577996 100843138 100844180 107813382 107766555
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