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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107807053   polyadenylate-binding protein 2-like 
 nta-r.1   107766555   polyadenylate-binding protein 2 
 nta-r.1   107774400   polyadenylate-binding protein 2 
 nta-r.1   107805351   polyadenylate-binding protein 2 
 sly-u.5   101247002   polyadenylate-binding protein 1 
 sly-u.5   104646444   polyadenylate-binding protein 1 
 sly-u.5   101248758   polyadenylate-binding protein 1-like 
 sot-r.1   102604568   polyadenylate-binding protein 2-like 
 sot-r.1   102597580   polyadenylate-binding protein 1-like 
 sot-r.1   102596687   polyadenylate-binding protein 1-like 
 ath-u.5   AT5G10350   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   PABN1   polyadenylate-binding protein 1 
 ath-u.5   AT5G65260   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100527545   RRM domain-containing protein 
 gma-u.5   100527139   RNA recognition motif-containing protein 
 gma-u.5   100789721   polyadenylate-binding protein 2 
 bra-r.6   103864862   polyadenylate-binding protein 1 
 bra-r.6   103873956   polyadenylate-binding protein 2 
 bra-r.6   103857200   polyadenylate-binding protein 1 
 vvi-u.5   100258174   polyadenylate-binding protein 2 
 vvi-u.5   100242522   polyadenylate-binding protein 2 
 vvi-u.5   100855316   polyadenylate-binding protein 2 
 ppo-u.5   18103845   polyadenylate-binding protein 1 
 ppo-u.5   7496613   polyadenylate-binding protein 2 
 ppo-u.5   7492020   polyadenylate-binding protein 2 
 mtr-u.5   11406230   polyadenylate-binding protein 2 
 mtr-u.5   11433289   polyadenylate-binding protein 1 
 mtr-u.5   25501878   polyadenylate-binding protein 2 
 ghi-r.1   107949691   polyadenylate-binding protein 1 
 ghi-r.1   107929069   polyadenylate-binding protein 2 
 ghi-r.1   107950438   polyadenylate-binding protein 2 
 bna-r.1   125594341   polyadenylate-binding protein 2 
 bna-r.1   125585440   polyadenylate-binding protein 1-like 
 bna-r.1   125605822   polyadenylate-binding protein 2-like 
 cit-r.1   102577996   poly(A)-binding protein 1 
 cit-r.1   102625039   polyadenylate-binding protein 2-like 
 cit-r.1   102620020   polyadenylate-binding protein 2 
 osa-u.5   4330785   polyadenylate-binding protein 2 
 osa-u.5   4340509   polyadenylate-binding protein 2 
 zma-u.5   100282115   polyadenylate-binding protein 2 
 zma-u.5   100283584   polyadenylate-binding protein 2 
 zma-u.5   100194063   uncharacterized LOC100194063 
 tae-r.2   123128452   polyadenylate-binding protein 2 
 tae-r.2   123138329   polyadenylate-binding protein 2 
 tae-r.2   123145576   polyadenylate-binding protein 2 
 hvu-r.1   123405955   polyadenylate-binding protein 2-like 
 hvu-r.1   123413657   polyadenylate-binding protein 2-like 
 sbi-r.1   8065487   polyadenylate-binding protein 2 
 sbi-r.1   110434511   polyadenylate-binding protein 2-like 
 sbi-r.1   8058063   polyadenylate-binding protein 1 
 bdi-r.1   100844180   polyadenylate-binding protein 2 
 bdi-r.1   100843138   polyadenylate-binding protein 2 
 cre-r.1   CHLRE_06g274500v5   uncharacterized protein 

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Top 50 coexpressed genes to 107807053 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107807053 (nta-r.1 coexpression data)

CoexMap"107807053"


ntaLOC107807053 | Entrez gene ID : 107807053      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta03015 [list] [network] mRNA surveillance pathway (250 genes)
GO BP
GO CC
GO MF
GO:0008143 [list] [network] poly(A) binding  (11 genes)  IEA  
Protein XP_016486829.1 [sequence] [blastp]
XP_016486835.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016486829.1)
cyto 5,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016486835.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016486829.1)
other 9  (predict for XP_016486835.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107807053
nta-r.1
for
107766555
nta-r.1
for
107774400
nta-r.1
for
107805351
sly-u.5
for
101247002
sly-u.5
for
104646444
sly-u.5
for
101248758
sot-r.1
for
102604568
sot-r.1
for
102597580
sot-r.1
for
102596687
ath-u.5
for
AT5G10350
ath-u.5
for
PABN1
ath-u.5
for
AT5G65260
gma-u.5
for
100527545
gma-u.5
for
100527139
gma-u.5
for
100789721
bra-r.6
for
103864862
bra-r.6
for
103873956
bra-r.6
for
103857200
vvi-u.5
for
100258174
vvi-u.5
for
100242522
vvi-u.5
for
100855316
ppo-u.5
for
18103845
ppo-u.5
for
7496613
ppo-u.5
for
7492020
mtr-u.5
for
11406230
mtr-u.5
for
11433289
mtr-u.5
for
25501878
ghi-r.1
for
107949691
ghi-r.1
for
107929069
ghi-r.1
for
107950438
bna-r.1
for
125594341
bna-r.1
for
125585440
bna-r.1
for
125605822
cit-r.1
for
102577996
cit-r.1
for
102625039
cit-r.1
for
102620020
osa-u.5
for
4330785
osa-u.5
for
4340509
zma-u.5
for
100282115
zma-u.5
for
100283584
zma-u.5
for
100194063
tae-r.2
for
123128452
tae-r.2
for
123138329
tae-r.2
for
123145576
hvu-r.1
for
123405955
hvu-r.1
for
123413657
sbi-r.1
for
8065487
sbi-r.1
for
110434511
sbi-r.1
for
8058063
bdi-r.1
for
100844180
bdi-r.1
for
100843138
cre-r.1
for
CHLRE_06g274500v5


Ortholog ID: 886
Species nta nta nta sly sly sly sot sot sot ath ath ath gma gma gma bra bra vvi vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna cit cit cit osa osa zma zma zma tae tae hvu hvu sbi sbi sbi bdi bdi cre
Symbol LOC107807053 LOC107766555 LOC107813382 LOC101247002 LOC104646444 LOC101260498 LOC102604568 LOC102596687 LOC102591574 AT5G10350 PABN1 AT5G65260 LOC100527139 LOC100791351 LOC100784473 LOC103864862 LOC103857200 LOC100258174 LOC100242522 LOC100855316 LOC18103845 LOC7496613 LOC7466796 LOC11406230 LOC11433289 LOC25484152 LOC121225729 LOC107920414 LOC107933492 LOC125585440 LOC106382880 LOC106426920 LOC102577996 LOC102625039 LOC102620020 LOC4330785 LOC4340509 LOC100282115 LOC100194063 LOC100285979 LOC123138329 LOC123157058 LOC123405955 LOC123413657 LOC8065487 LOC110434511 LOC8058063 LOC100844180 LOC100843138 CHLRE_06g274500v5
Function* polyadenylate-binding protein 2-like polyadenylate-binding protein 2 polyadenylate-binding protein 1-like polyadenylate-binding protein 1 polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 1-like polyadenylate-binding protein 2-like RNA-binding (RRM/RBD/RNP motifs) family protein polyadenylate-binding protein 1 RNA-binding (RRM/RBD/RNP motifs) family protein RNA recognition motif-containing protein polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 1 polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 3 polyadenylate-binding protein 2 polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 1 polyadenylate-binding protein 1-like polyadenylate-binding protein 2 polyadenylate-binding protein 2 poly(A)-binding protein 1 polyadenylate-binding protein 2-like polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 uncharacterized LOC100194063 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 1 polyadenylate-binding protein 2 polyadenylate-binding protein 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta00600 Sphingolipid metabolism 2
nta04382 Cornified envelope formation 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly04120 Ubiquitin mediated proteolysis 3
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 5
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath04141 Protein processing in endoplasmic reticulum 3
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00190 Oxidative phosphorylation 3
ath04144 Endocytosis 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00071 Fatty acid degradation 2
gma00350 Tyrosine metabolism 2
gma00620 Pyruvate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 3
bra03008 Ribosome biogenesis in eukaryotes 3
bra00730 Thiamine metabolism 2
bra01232 Nucleotide metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03015 mRNA surveillance pathway 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03040 Spliceosome 5
mtr03420 Nucleotide excision repair 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03060 Protein export 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03060 Protein export 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
bna03250 Viral life cycle - HIV-1 3
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
bna03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 9
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03040 Spliceosome 3
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03050 Proteasome 5
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 4
hvu03040 Spliceosome 3
hvu03083 Polycomb repressive complex 3
hvu04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi04144 Endocytosis 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03050 Proteasome 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 5
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 3
bdi03040 Spliceosome 3
bdi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 5
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03015 mRNA surveillance pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107807053 107766555 107813382 101247002 104646444 101260498 102604568 102596687 102591574 830899 835186 836651 100527139 100791351 100784473 103864862 103857200 100258174 100242522 100855316 18103845 7496613 7466796 11406230 11433289 25484152 121225729 107920414 107933492 125585440 106382880 106426920 102577996 102625039 102620020 4330785 4340509 100282115 100194063 100285979 123138329 123157058 123405955 123413657 8065487 110434511 8058063 100844180 100843138 5721773
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