ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7498060	VAN3-binding protein
ppo-r.4	7498060	VAN3-binding protein
ppo-m.4	7498060	VAN3-binding protein
ppo-u.5	7467503	VAN3-binding protein
ppo-u.5	7480017	VAN3-binding protein
gma-u.5	100784359	VAN3-binding protein
gma-u.5	100793202	VAN3-binding protein
gma-u.5	100793882	VAN3-binding protein
mtr-u.5	25482955	VAN3-binding protein
mtr-u.5	11425610	VAN3-binding protein
mtr-u.5	25485148	VAN3-binding protein
ath-u.5	AT3G22810	auxin canalization protein (DUF828)
ath-u.5	FKD1	FORKED 1
ath-u.5	AT4G14740	auxin canalization protein (DUF828)
bra-r.6	103833465	VAN3-binding protein
bra-r.6	103834337	VAN3-binding protein
bra-r.6	103848844	VAN3-binding protein
vvi-u.5	100256307	VAN3-binding protein
vvi-u.5	100854030	VAN3-binding protein
ghi-r.1	107930679	VAN3-binding protein
ghi-r.1	107929023	VAN3-binding protein
ghi-r.1	107928440	VAN3-binding protein
bna-r.1	106396877	VAN3-binding protein
bna-r.1	106360611	VAN3-binding protein
bna-r.1	106347034	VAN3-binding protein
cit-r.1	102623744	VAN3-binding protein
cit-r.1	102621060	VAN3-binding protein
sly-u.5	101254530	VAN3-binding protein
sly-u.5	101264972	VAN3-binding protein
sot-r.1	102600556	VAN3-binding protein-like
sot-r.1	102598173	VAN3-binding protein
nta-r.1	107816883	VAN3-binding protein
nta-r.1	107781740	VAN3-binding protein
nta-r.1	107774238	VAN3-binding protein
osa-u.5	4352732	VAN3-binding protein
osa-u.5	4333519	VAN3-binding protein
zma-u.5	100278869	uncharacterized LOC100278869
zma-u.5	100383305	VAN3-binding protein
zma-u.5	103639593	VAN3-binding protein
tae-r.2	123102299	VAN3-binding protein
tae-r.2	123122749	VAN3-binding protein
tae-r.2	123104939	VAN3-binding protein
hvu-r.1	123452139	VAN3-binding protein-like
hvu-r.1	123396363	VAN3-binding protein-like
sbi-r.1	8076658	VAN3-binding protein
sbi-r.1	8062238	VAN3-binding protein
bdi-r.1	100828163	VAN3-binding protein
bdi-r.1	100833525	VAN3-binding protein

Top 50 coexpressed genes to 7498060 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7498060 (ppo-u.5 coexpression data)

CoexMap"7498060"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010305 [list] [network] leaf vascular tissue pattern formation	(7 genes)	IEA
GO:0010087 [list] [network] phloem or xylem histogenesis	(23 genes)	IEA
GO:0009734 [list] [network] auxin-activated signaling pathway	(29 genes)	IEA

GO CC

GO MF

Protein

XP_024467146.1 [sequence] [blastp]
XP_024467147.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, E.R. 3, chlo 1, vacu 1, E.R._plas 1, cyto_E.R. 1	(predict for XP_024467146.1)
nucl 3, E.R. 3, chlo 1, mito 1, vacu 1, cyto_nucl 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1, E.R._plas 1, cyto_E.R. 1	(predict for XP_024467147.1)

Subcellular
localization
TargetP

other 7, chlo 3	(predict for XP_024467146.1)
other 7, chlo 3	(predict for XP_024467147.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7498060	ppo-r.4 for 7498060	ppo-m.4 for 7498060	ppo-u.5 for 7467503	ppo-u.5 for 7480017	gma-u.5 for 100784359	gma-u.5 for 100793202	gma-u.5 for 100793882	mtr-u.5 for 25482955	mtr-u.5 for 11425610	mtr-u.5 for 25485148	ath-u.5 for AT3G22810	ath-u.5 for FKD1	ath-u.5 for AT4G14740	bra-r.6 for 103833465	bra-r.6 for 103834337	bra-r.6 for 103848844	vvi-u.5 for 100256307	vvi-u.5 for 100854030	ghi-r.1 for 107930679	ghi-r.1 for 107929023	ghi-r.1 for 107928440	bna-r.1 for 106396877	bna-r.1 for 106360611	bna-r.1 for 106347034	cit-r.1 for 102623744	cit-r.1 for 102621060	sly-u.5 for 101254530	sly-u.5 for 101264972	sot-r.1 for 102600556	sot-r.1 for 102598173	nta-r.1 for 107816883	nta-r.1 for 107781740	nta-r.1 for 107774238	osa-u.5 for 4352732	osa-u.5 for 4333519	zma-u.5 for 100278869	zma-u.5 for 100383305	zma-u.5 for 103639593	tae-r.2 for 123102299	tae-r.2 for 123122749	tae-r.2 for 123104939	hvu-r.1 for 123452139	hvu-r.1 for 123396363	sbi-r.1 for 8076658	sbi-r.1 for 8062238	bdi-r.1 for 100828163	bdi-r.1 for 100833525

Ortholog

Ortholog ID: 1745

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

FKD1

Function^*

VAN3-binding protein

auxin canalization protein (DUF828)

FORKED 1

auxin canalization protein (DUF828)

VAN3-binding protein

VAN3-binding protein-like

VAN3-binding protein

VAN3-binding protein-like

VAN3-binding protein

uncharacterized LOC100278869

VAN3-binding protein

VAN3-binding protein-like

VAN3-binding protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00562	Inositol phosphate metabolism	2
gma04070	Phosphatidylinositol signaling system	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi02010	ABC transporters	2
ghi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi02010	ABC transporters	2
ghi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	6
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	6
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00073	Cutin, suberine and wax biosynthesis	2
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

7498060

7480017

100793882

100805743

100814874

11425610

25485148

821852

825505

834409

103833465

103848844

103871780

100256307

100854030

107930679

107928440

107931397

106347034

106376225

106412041

102623744

102621060

101254530

101264972

102600556

102598173

107816883

107781740

107774238

4352732

4333519

100278869

100383305

103639593

123122749

123110449

123113240

123452139

123396363

8076658

8062238

100828163

100833525

The preparation time of this page was 1.9 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	3	3	2	3	3	2	2	2	3	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7498060 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7498060 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**