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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-m.5   101268123   chlorophyll a-b binding protein 13, chloroplastic-like 
 sly-u.5   101268123   chlorophyll a-b binding protein 13, chloroplastic-like 
 sly-r.6   101268123   chlorophyll a-b binding protein 13, chloroplastic-like 
 sly-u.5   CAB13   chlorophyll a-b binding protein 13, chloroplastic 
 ath-u.5   LHCB3   light-harvesting chlorophyll B-binding protein 3 
 gma-u.5   100790960   chlorophyll a-b binding protein 13, chloroplastic-like 
 gma-u.5   100779387   chlorophyll a-b binding protein 13, chloroplastic-like 
 vvi-u.5   100260599   chlorophyll a-b binding protein 13, chloroplastic 
 ppo-u.5   18095653   chlorophyll a-b binding protein 13, chloroplastic 
 mtr-u.5   11405314   chlorophyll a-b binding protein 13, chloroplastic 
 osa-u.5   4343604   chlorophyll a-b binding protein of LHCII type III, chloroplastic 
 zma-u.5   100284154   chlorophyll a-b binding protein of LHCII type III 

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Top 50 coexpressed genes to 101268123 (sly-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101268123 (sly-m.5 coexpression data)

CoexMap"101268123"


slyLOC101268123 | Entrez gene ID : 101268123      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00196 [list] [network] Photosynthesis - antenna proteins (29 genes)
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (29 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (118 genes)  IEA  
GO CC
GO:0010287 [list] [network] plastoglobule  (20 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (117 genes)  IEA  
GO:0009941 [list] [network] chloroplast envelope  (118 genes)  IEA  
GO MF
Protein XP_004244187.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_004244187.2)
Subcellular
localization
TargetP
mito 3,  other 3  (predict for XP_004244187.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-m.5
for
101268123

.
sly-u.5
for
101268123

.
sly-r.6
for
101268123

.
sly-u.5
for
CAB13

.
ath-u.5
for
LHCB3

.
gma-u.5
for
100790960

.
gma-u.5
for
100779387

.
vvi-u.5
for
100260599

.
ppo-u.5
for
18095653

.
mtr-u.5
for
11405314

.
osa-u.5
for
4343604

.
zma-u.5
for
100284154

.


Ortholog ID: 6998
Species ath gma gma sly sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol LHCB3 LOC100779387 LOC100790960 CAB13 LOC101268123 LOC4343604 LOC100284154 LOC103844887 LOC100260599 LOC18095653 LOC11405314 LOC123188262 LOC123148365 LOC123425700 LOC107903531 LOC107948618 LOC111198551 LOC106380936 LOC8081748 LOC102586284 LOC102584787 LOC102625194 LOC100836842 LOC107790089 LOC107793205
Function* light-harvesting chlorophyll B-binding protein 3 chlorophyll a-b binding protein 13, chloroplastic-like chlorophyll a-b binding protein 13, chloroplastic-like chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic-like chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein of LHCII type III chlorophyll a-b binding protein 3, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 3, chloroplastic chlorophyll a-b binding protein 3, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 10
ath00195 Photosynthesis 7
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 12
sly00860 Porphyrin metabolism 3
sly00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 17
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 10
osa00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 16
zma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 12
bra00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00196 Photosynthesis - antenna proteins 10
vvi00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 10
ppo00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 7
mtr00195 Photosynthesis 5
mtr00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 13
tae00195 Photosynthesis 6
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 11
hvu00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 13
sbi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 15
sot00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 14
sot00860 Porphyrin metabolism 4
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 6
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 14
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835515 100779387 100790960 101243766 101268123 4343604 100284154 103844887 100260599 18095653 11405314 123188262 123148365 123425700 107903531 107948618 111198551 106380936 8081748 102586284 102584787 102625194 100836842 107790089 107793205
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