ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-m.5	543715	TK1-like deoxyribonucleoside kinase
sly-u.5	543715	TK1-like deoxyribonucleoside kinase
sly-r.6	543715	TK1-like deoxyribonucleoside kinase
sot-r.1	102591809	thymidine kinase-like
sot-r.1	102605312	thymidine kinase-like
sot-r.1	102599438	thymidine kinase-like
nta-r.1	107762488	thymidine kinase-like
nta-r.1	107804836	thymidine kinase
nta-r.1	107804354	thymidine kinase-like
ath-u.5	TK1a	Thymidine kinase
ath-u.5	TK1b	Thymidine kinase
gma-u.5	100818437	thymidine kinase a
gma-u.5	100813201	thymidine kinase a
gma-u.5	100809756	thymidine kinase a
bra-r.6	103870632	thymidine kinase a
bra-r.6	103860530	thymidine kinase b
vvi-u.5	100852993	thymidine kinase
ppo-u.5	18106026	thymidine kinase a
ppo-u.5	18099758	thymidine kinase
mtr-u.5	112418988	thymidine kinase a
mtr-u.5	11436557	thymidine kinase a
ghi-r.1	107963718	thymidine kinase
ghi-r.1	107960161	thymidine kinase
ghi-r.1	107912609	thymidine kinase a
bna-r.1	111204507	thymidine kinase a
cit-r.1	102614598	thymidine kinase a
osa-u.5	4331376	thymidine kinase-like
zma-u.5	100144301	thymidine kinase
tae-r.2	123144030	thymidine kinase
tae-r.2	123182942	thymidine kinase
tae-r.2	123066683	thymidine kinase
hvu-r.1	123449331	thymidine kinase-like
sbi-r.1	8066225	thymidine kinase
bdi-r.1	100835449	thymidine kinase
cre-r.1	CHLRE_03g192600v5	uncharacterized protein

Top 50 coexpressed genes to 543715 (sly-m.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 543715 (sly-m.5 coexpression data)

CoexMap"543715"

[Cytoscape]

Annotation

functional annotation

KEGG

sly00240 [list] [network] Pyrimidine metabolism (66 genes)

sly01232 [list] [network] Nucleotide metabolism (84 genes)

GO BP

GO:0046104 [list] [network] thymidine metabolic process

(2 genes)

IEA

GO CC

GO MF

GO:0004797 [list] [network] thymidine kinase activity	(2 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1916 genes)	IEA

Protein

NP_001234713.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, cyto 3, vacu 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for NP_001234713.1)

Subcellular
localization
TargetP

chlo 4, other 3

(predict for NP_001234713.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-m.5 for 543715	sly-u.5 for 543715	sly-r.6 for 543715	sot-r.1 for 102591809	sot-r.1 for 102605312	sot-r.1 for 102599438	nta-r.1 for 107762488	nta-r.1 for 107804836	nta-r.1 for 107804354	ath-u.5 for TK1a	ath-u.5 for TK1b	gma-u.5 for 100818437	gma-u.5 for 100813201	gma-u.5 for 100809756	bra-r.6 for 103870632	bra-r.6 for 103860530	vvi-u.5 for 100852993	ppo-u.5 for 18106026	ppo-u.5 for 18099758	mtr-u.5 for 112418988	mtr-u.5 for 11436557	ghi-r.1 for 107963718	ghi-r.1 for 107960161	ghi-r.1 for 107912609	bna-r.1 for 111204507	cit-r.1 for 102614598	osa-u.5 for 4331376	zma-u.5 for 100144301	tae-r.2 for 123144030	tae-r.2 for 123182942	tae-r.2 for 123066683	hvu-r.1 for 123449331	sbi-r.1 for 8066225	bdi-r.1 for 100835449	cre-r.1 for CHLRE_03g192600v5

Ortholog

Ortholog ID: 3682

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TK1a

TK1b

Function^*

TK1-like deoxyribonucleoside kinase

thymidine kinase-like

Thymidine kinase

thymidine kinase a

thymidine kinase b

thymidine kinase a

thymidine kinase

thymidine kinase a

thymidine kinase

thymidine kinase a

thymidine kinase

thymidine kinase a

thymidine kinase-like

thymidine kinase

thymidine kinase-like

thymidine kinase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03440	Homologous recombination	2
sly03460	Fanconi anemia pathway	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	3
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	4
nta01232	Nucleotide metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	4
nta01232	Nucleotide metabolism	4
nta03082	ATP-dependent chromatin remodeling	2
nta03030	DNA replication	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	4
nta01232	Nucleotide metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	5
ath03030	DNA replication	3
ath03420	Nucleotide excision repair	3
ath03410	Base excision repair	3
ath03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	4
gma00240	Pyrimidine metabolism	4
gma01232	Nucleotide metabolism	4
gma03420	Nucleotide excision repair	2
gma03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00240	Pyrimidine metabolism	4
gma01232	Nucleotide metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	5
gma03420	Nucleotide excision repair	3
gma03430	Mismatch repair	3
gma03440	Homologous recombination	3
gma00240	Pyrimidine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03440	Homologous recombination	4
bra03030	DNA replication	3
bra03460	Fanconi anemia pathway	3
bra00240	Pyrimidine metabolism	2
bra01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03030	DNA replication	5
vvi03420	Nucleotide excision repair	4
vvi00240	Pyrimidine metabolism	3
vvi01232	Nucleotide metabolism	3
vvi03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03030	DNA replication	5
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01230	Biosynthesis of amino acids	5
ghi00220	Arginine biosynthesis	2
ghi00250	Alanine, aspartate and glutamate metabolism	2
ghi00260	Glycine, serine and threonine metabolism	2
ghi00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01230	Biosynthesis of amino acids	5
ghi00220	Arginine biosynthesis	2
ghi00250	Alanine, aspartate and glutamate metabolism	2
ghi00260	Glycine, serine and threonine metabolism	2
ghi00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00240	Pyrimidine metabolism	7
ghi01232	Nucleotide metabolism	7
ghi00230	Purine metabolism	5
ghi00480	Glutathione metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	5
bna01232	Nucleotide metabolism	5
bna03440	Homologous recombination	3
bna03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	13
osa01230	Biosynthesis of amino acids	4
osa00340	Histidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	5
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae03008	Ribosome biogenesis in eukaryotes	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	5
tae00280	Valine, leucine and isoleucine degradation	3
tae00410	beta-Alanine metabolism	3
tae00640	Propanoate metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	5
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae03008	Ribosome biogenesis in eukaryotes	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00240	Pyrimidine metabolism	4
bdi01240	Biosynthesis of cofactors	3
bdi01230	Biosynthesis of amino acids	3
bdi00250	Alanine, aspartate and glutamate metabolism	2
bdi03010	Ribosome	2

Expression

Expression pattern

Entrez Gene ID^*

543715

102591809

102605312

102599438

107762488

107789082

107769449

819971

832371

100818437

100809756

100781341

103860530

103859240

100852993

18106026

18099758

112418988

11436557

107963718

107960161

107922966

106401596

102614598

4331376

100144301

123144030

123182942

123066683

123449331

8066225

100835449

5718689

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Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	3	2	3	2	1	2	2	3	1	1	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 543715 (sly-m.5 coexpression data)

Top 50 enrichment test to 543715 (sly-m.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**