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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-r.6   101257297   DNA polymerase eta 
 sly-u.5   101257297   DNA polymerase eta 
 sot-r.1   102599189   DNA polymerase eta 
 nta-r.1   107795010   DNA polymerase eta 
 nta-r.1   107829874   DNA polymerase eta-like 
 ath-u.5   POLH   Y-family DNA polymerase H 
 gma-u.5   100780894   DNA polymerase eta 
 bra-r.6   103827832   DNA polymerase eta 
 vvi-u.5   100266192   DNA polymerase eta 
 ppo-u.5   7465359   DNA polymerase eta 
 mtr-u.5   25493444   DNA polymerase eta 
 ghi-r.1   107915273   DNA polymerase eta 
 ghi-r.1   107960652   DNA polymerase eta 
 bna-r.1   106386352   DNA polymerase eta-like 
 bna-r.1   106391119   DNA polymerase eta 
 cit-r.1   102631204   DNA polymerase eta 
 osa-u.5   4325305   DNA polymerase eta 
 zma-u.5   103651191   DNA polymerase eta 
 tae-r.2   123079219   DNA polymerase eta 
 tae-r.2   123070829   DNA polymerase eta 
 tae-r.2   123062100   DNA polymerase eta 
 hvu-r.1   123444447   DNA polymerase eta 
 sbi-r.1   8075604   DNA polymerase eta 
 bdi-r.1   100821109   DNA polymerase eta 
 cre-r.1   CHLRE_12g524150v5   uncharacterized protein 

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Top 50 coexpressed genes to 101257297 (sly-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101257297 (sly-r.6 coexpression data)

CoexMap"101257297"


slyLOC101257297 | Entrez gene ID : 101257297    
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 1 1 1 1 1 2 2 1 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03460 [list] [network] Fanconi anemia pathway (41 genes)
GO BP
GO:0042276 [list] [network] error-prone translesion synthesis  (6 genes)  IEA  
GO:0009314 [list] [network] response to radiation  (123 genes)  IEA  
GO CC
GO:0035861 [list] [network] site of double-strand break  (10 genes)  IEA  
GO:0005657 [list] [network] replication fork  (43 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (17 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (32 genes)  IEA  
Protein XP_004228955.1 [sequence] [blastp]
XP_010318257.1 [sequence] [blastp]
XP_010318262.1 [sequence] [blastp]
XP_010318263.1 [sequence] [blastp]
XP_010318268.1 [sequence] [blastp]
XP_010318272.1 [sequence] [blastp]
XP_010318277.1 [sequence] [blastp]
XP_010318282.1 [sequence] [blastp]
XP_010318287.1 [sequence] [blastp]
XP_025885892.1 [sequence] [blastp]
XP_025885905.1 [sequence] [blastp]
XP_069153603.1 [sequence] [blastp]
XP_069153604.1 [sequence] [blastp]
XP_069153605.1 [sequence] [blastp]
XP_069153606.1 [sequence] [blastp]
XP_069153608.1 [sequence] [blastp]
XP_069153609.1 [sequence] [blastp]
XP_069153612.1 [sequence] [blastp]
XP_069153618.1 [sequence] [blastp]
XP_069153620.1 [sequence] [blastp]
XP_069153621.1 [sequence] [blastp]
XP_069153622.1 [sequence] [blastp]
XP_069153627.1 [sequence] [blastp]
XP_069153628.1 [sequence] [blastp]
XP_069153631.1 [sequence] [blastp]
XP_069153632.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  golg_plas 4,  golg 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_004228955.1)
nucl 3,  chlo 2,  cyto_nucl 2,  nucl_plas 2  (predict for XP_010318257.1)
nucl 3,  chlo 2,  cyto_nucl 2,  nucl_plas 2  (predict for XP_010318262.1)
nucl 3,  chlo 2,  cyto_nucl 2,  nucl_plas 2  (predict for XP_010318263.1)
nucl 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2  (predict for XP_010318268.1)
plas 4,  golg_plas 4,  golg 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_010318272.1)
nucl 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2  (predict for XP_010318277.1)
nucl 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2  (predict for XP_010318282.1)
nucl 4,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_010318287.1)
nucl 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2  (predict for XP_025885892.1)
chlo 3,  nucl 2,  mito 1,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_025885905.1)
nucl 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2  (predict for XP_069153603.1)
nucl 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2  (predict for XP_069153604.1)
plas 4,  golg_plas 4,  golg 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_069153605.1)
nucl 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2  (predict for XP_069153606.1)
nucl 3,  chlo 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_069153608.1)
nucl 3,  chlo 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_069153609.1)
nucl 4,  chlo 2,  cyto_nucl 2,  nucl_plas 2  (predict for XP_069153612.1)
nucl 4,  chlo 2,  cyto_nucl 2,  nucl_plas 2  (predict for XP_069153618.1)
chlo 3,  nucl 2,  mito 1,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_069153620.1)
chlo 3,  nucl 3,  mito 1,  cyto_nucl 1,  plas 1,  extr 1,  cysk 1,  golg 1,  cyto_mito 1,  golg_plas 1,  cysk_plas 1  (predict for XP_069153621.1)
nucl 7,  cyto 1,  vacu 1,  E.R. 1,  cysk 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_069153622.1)
nucl 7,  cyto 1,  vacu 1,  E.R. 1,  cysk 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_069153627.1)
nucl 7,  cyto 1,  vacu 1,  E.R. 1,  cysk 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_069153628.1)
nucl 7,  cyto 1,  vacu 1,  E.R. 1,  cysk 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_069153631.1)
nucl 7,  cyto 1,  vacu 1,  E.R. 1,  cysk 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_069153632.1)
Subcellular
localization
TargetP
scret 4  (predict for XP_004228955.1)
other 7  (predict for XP_010318257.1)
other 7  (predict for XP_010318262.1)
other 7  (predict for XP_010318263.1)
other 7  (predict for XP_010318268.1)
scret 4  (predict for XP_010318272.1)
other 7  (predict for XP_010318277.1)
other 7  (predict for XP_010318282.1)
other 7  (predict for XP_010318287.1)
other 7  (predict for XP_025885892.1)
mito 6  (predict for XP_025885905.1)
other 7  (predict for XP_069153603.1)
other 7  (predict for XP_069153604.1)
scret 4  (predict for XP_069153605.1)
other 7  (predict for XP_069153606.1)
other 7  (predict for XP_069153608.1)
other 7  (predict for XP_069153609.1)
other 7  (predict for XP_069153612.1)
other 7  (predict for XP_069153618.1)
mito 6  (predict for XP_069153620.1)
mito 6  (predict for XP_069153621.1)
other 8  (predict for XP_069153622.1)
other 8  (predict for XP_069153627.1)
other 8  (predict for XP_069153628.1)
other 8  (predict for XP_069153631.1)
other 8  (predict for XP_069153632.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-r.6
for
101257297
sly-u.5
for
101257297
sot-r.1
for
102599189
nta-r.1
for
107795010
nta-r.1
for
107829874
ath-u.5
for
POLH
gma-u.5
for
100780894
bra-r.6
for
103827832
vvi-u.5
for
100266192
ppo-u.5
for
7465359
mtr-u.5
for
25493444
ghi-r.1
for
107915273
ghi-r.1
for
107960652
bna-r.1
for
106386352
bna-r.1
for
106391119
cit-r.1
for
102631204
osa-u.5
for
4325305
zma-u.5
for
103651191
tae-r.2
for
123079219
tae-r.2
for
123070829
tae-r.2
for
123062100
hvu-r.1
for
123444447
sbi-r.1
for
8075604
bdi-r.1
for
100821109
cre-r.1
for
CHLRE_12g524150v5


Ortholog ID: 6671
Species sly sot nta nta ath gma bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae tae hvu sbi bdi cre
Symbol LOC101257297 LOC102599189 LOC107795010 LOC107829874 POLH LOC100780894 LOC103827832 LOC100266192 LOC7465359 LOC25493444 LOC107915273 LOC107960652 LOC106386352 LOC106391119 LOC102631204 LOC4325305 LOC103655706 LOC123079219 LOC123070829 LOC123062100 LOC123444447 LOC8075604 LOC100821109 CHLRE_12g524150v5
Function* DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta-like Y-family DNA polymerase H DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta-like DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta DNA polymerase eta uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03460 Fanconi anemia pathway 3
ath03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
gma03430 Mismatch repair 3
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ghi01240 Biosynthesis of cofactors 4
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 4
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101257297 102599189 107795010 107829874 834503 100780894 103827832 100266192 7465359 25493444 107915273 107960652 106386352 106391119 102631204 4325305 103655706 123079219 123070829 123062100 123444447 8075604 100821109 5722524
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