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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101251308   pentatricopeptide repeat-containing protein At5g43790 
 sly-r.6   101251308   pentatricopeptide repeat-containing protein At5g43790 
 sot-r.1   102604877   pentatricopeptide repeat-containing protein At5g43790 
 nta-r.1   107760708   pentatricopeptide repeat-containing protein At5g43790-like 
 nta-r.1   107823102   pentatricopeptide repeat-containing protein At5g43790 
 ath-u.5   AT5G43790   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103827952   pentatricopeptide repeat-containing protein At5g43790 
 vvi-u.5   100264947   pentatricopeptide repeat-containing protein At5g43790 
 mtr-u.5   11440274   pentatricopeptide repeat-containing protein At5g43790 
 ghi-r.1   107928457   pentatricopeptide repeat-containing protein At5g43790 
 ghi-r.1   107929130   pentatricopeptide repeat-containing protein At5g43790 
 bna-r.1   125589569   pentatricopeptide repeat-containing protein At5g43790-like 
 osa-u.5   9267687   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 zma-u.5   103636848   pentatricopeptide repeat-containing protein At5g66520 
 tae-r.2   123077360   pentatricopeptide repeat-containing protein At5g66520-like 
 hvu-r.1   123450365   pentatricopeptide repeat-containing protein At5g43790-like 
 hvu-r.1   123442860   pentatricopeptide repeat-containing protein At5g66520-like 

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Top 50 coexpressed genes to 101251308 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101251308 (sly-u.5 coexpression data)

CoexMap""


slyLOC101251308 | Entrez gene ID : 101251308      
Species sly sot nta ath bra vvi mtr ghi bna osa zma tae hvu bdi cit sbi cre ppo gma
Paralog 2 1 2 1 1 1 1 2 1 1 1 1 2 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function pentatricopeptide repeat-containing protein At5g43790
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1242 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004244755.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_004244755.1)
Subcellular
localization
TargetP
other 6  (predict for XP_004244755.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101251308
sly-r.6
for
101251308
sot-r.1
for
102604877
nta-r.1
for
107760708
nta-r.1
for
107823102
ath-u.5
for
AT5G43790
bra-r.6
for
103827952
vvi-u.5
for
100264947
mtr-u.5
for
11440274
ghi-r.1
for
107928457
ghi-r.1
for
107929130
bna-r.1
for
125589569
osa-u.5
for
9267687
zma-u.5
for
103636848
tae-r.2
for
123077360
hvu-r.1
for
123450365
hvu-r.1
for
123442860

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Ortholog ID: 9138
Species sly sot nta nta ath bra vvi mtr ghi ghi bna osa zma hvu hvu
Symbol LOC101251308 LOC102604877 LOC107760708 LOC107823102 AT5G43790 LOC103827952 LOC100264947 LOC11440274 LOC107928457 LOC107929130 LOC125589569 LOC9267687 LOC103636848 LOC123450365 LOC123442860
Function* pentatricopeptide repeat-containing protein At5g43790 pentatricopeptide repeat-containing protein At5g43790 pentatricopeptide repeat-containing protein At5g43790-like pentatricopeptide repeat-containing protein At5g43790 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g43790 pentatricopeptide repeat-containing protein At5g43790 pentatricopeptide repeat-containing protein At5g43790 pentatricopeptide repeat-containing protein At5g43790 pentatricopeptide repeat-containing protein At5g43790 pentatricopeptide repeat-containing protein At5g43790-like pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g43790-like pentatricopeptide repeat-containing protein At5g66520-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 2
bra03040 Spliceosome 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101251308 102604877 107760708 107823102 834401 103827952 100264947 11440274 107928457 107929130 125589569 9267687 103636848 123450365 123442860
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