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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   ldh1   L-lactate dehydrogenase 
 sly-r.6   ldh1   L-lactate dehydrogenase 
 sly-u.5   ldh2   L-lactate dehydrogenase 
 sot-r.1   LDH-2   lactate dehydrogenase-2 
 sot-r.1   102604318   L-lactate dehydrogenase B 
 nta-r.1   107777573   L-lactate dehydrogenase B-like 
 nta-r.1   107780728   L-lactate dehydrogenase B-like 
 nta-r.1   107803141   L-lactate dehydrogenase B 
 ath-u.5   AT4G17260   Lactate/malate dehydrogenase family protein 
 gma-u.5   100818856   L-lactate dehydrogenase B 
 gma-u.5   100814897   L-lactate dehydrogenase B 
 gma-u.5   100803035   L-lactate dehydrogenase A 
 bra-r.6   103868260   L-lactate dehydrogenase B 
 bra-r.6   103860904   L-lactate dehydrogenase B 
 vvi-u.5   100250615   L-lactate dehydrogenase A 
 ppo-u.5   18093976   L-lactate dehydrogenase B 
 mtr-u.5   11406365   L-lactate dehydrogenase A 
 mtr-u.5   11427630   L-lactate dehydrogenase B 
 ghi-r.1   121203531   L-lactate dehydrogenase B 
 bna-r.1   106425371   L-lactate dehydrogenase B-like 
 bna-r.1   106381484   L-lactate dehydrogenase B-like 
 bna-r.1   106445067   L-lactate dehydrogenase B 
 cit-r.1   102614633   L-lactate dehydrogenase B 
 osa-u.5   4328012   L-lactate dehydrogenase A 
 osa-u.5   4339856   L-lactate dehydrogenase B 
 zma-u.5   100282503   lactate dehydrogenase1 
 zma-u.5   100193279   Lactate/malate dehydrogenase family protein 
 tae-r.2   123040414   L-lactate dehydrogenase B 
 tae-r.2   123048534   L-lactate dehydrogenase B 
 hvu-r.1   123402652   L-lactate dehydrogenase A 
 hvu-r.1   123429337   L-lactate dehydrogenase B 
 sbi-r.1   8085169   L-lactate dehydrogenase 
 sbi-r.1   8085170   L-lactate dehydrogenase B 
 bdi-r.1   100846734   L-lactate dehydrogenase B 

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Top 50 coexpressed genes to ldh1 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ldh1 (sly-u.5 coexpression data)

CoexMap"101252012"


slyldh1 | Entrez gene ID : 101252012      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 2 3 1 3 2 1 1 2 1 3 1 2 2 2 2 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00010 [list] [network] Glycolysis / Gluconeogenesis (133 genes)
sly00270 [list] [network] Cysteine and methionine metabolism (118 genes)
sly00620 [list] [network] Pyruvate metabolism (109 genes)
sly00640 [list] [network] Propanoate metabolism (52 genes)
GO BP
GO:0006089 [list] [network] lactate metabolic process  (8 genes)  IEA  
GO:0006090 [list] [network] pyruvate metabolic process  (80 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004459 [list] [network] L-lactate dehydrogenase (NAD+) activity  (2 genes)  IEA  
Protein NP_001266265.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  cyto 1,  mito 1,  vacu 1  (predict for NP_001266265.1)
Subcellular
localization
TargetP
chlo 7,  other 3  (predict for NP_001266265.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
ldh1
sly-r.6
for
ldh1
sly-u.5
for
ldh2
sot-r.1
for
LDH-2
sot-r.1
for
102604318
nta-r.1
for
107777573
nta-r.1
for
107780728
nta-r.1
for
107803141
ath-u.5
for
AT4G17260
gma-u.5
for
100818856
gma-u.5
for
100814897
gma-u.5
for
100803035
bra-r.6
for
103868260
bra-r.6
for
103860904
vvi-u.5
for
100250615
ppo-u.5
for
18093976
mtr-u.5
for
11406365
mtr-u.5
for
11427630
ghi-r.1
for
121203531
bna-r.1
for
106425371
bna-r.1
for
106381484
bna-r.1
for
106445067
cit-r.1
for
102614633
osa-u.5
for
4328012
osa-u.5
for
4339856
zma-u.5
for
100282503
zma-u.5
for
100193279
tae-r.2
for
123040414
tae-r.2
for
123048534
hvu-r.1
for
123402652
hvu-r.1
for
123429337
sbi-r.1
for
8085169
sbi-r.1
for
8085170
bdi-r.1
for
100846734


Ortholog ID: 4102
Species sly sly sot sot nta nta nta ath gma gma gma bra bra vvi ppo mtr mtr ghi bna bna bna cit osa osa zma zma tae tae hvu hvu sbi sbi bdi
Symbol ldh1 ldh2 LDH-2 LOC102604318 LOC107777573 LOC107803141 LOC107806030 AT4G17260 LOC100818856 LOC100814897 LOC100803035 LOC103868260 LOC103860904 LOC100250615 LOC18093976 LOC11406365 LOC11427630 LOC121203531 LOC106425371 LOC106445067 LOC106440238 LOC102614633 LOC4328012 LOC4339856 LOC100282503 LOC100193279 LOC123048534 LOC123131987 LOC123402652 LOC123429337 LOC8085169 LOC8085170 LOC100846734
Function* L-lactate dehydrogenase L-lactate dehydrogenase lactate dehydrogenase-2 L-lactate dehydrogenase B L-lactate dehydrogenase B-like L-lactate dehydrogenase B L-lactate dehydrogenase B-like Lactate/malate dehydrogenase family protein L-lactate dehydrogenase B L-lactate dehydrogenase B L-lactate dehydrogenase A L-lactate dehydrogenase B L-lactate dehydrogenase B L-lactate dehydrogenase A L-lactate dehydrogenase B L-lactate dehydrogenase A L-lactate dehydrogenase B L-lactate dehydrogenase B L-lactate dehydrogenase B-like L-lactate dehydrogenase B L-lactate dehydrogenase B L-lactate dehydrogenase B L-lactate dehydrogenase A L-lactate dehydrogenase B lactate dehydrogenase1 Lactate/malate dehydrogenase family protein L-lactate dehydrogenase B L-lactate dehydrogenase A L-lactate dehydrogenase A L-lactate dehydrogenase B L-lactate dehydrogenase L-lactate dehydrogenase B L-lactate dehydrogenase B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00480 Glutathione metabolism 3
sly01250 Biosynthesis of nucleotide sugars 2
sly00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly00510 N-Glycan biosynthesis 3
sly00513 Various types of N-glycan biosynthesis 3
sly04016 MAPK signaling pathway - plant 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 4
sot04136 Autophagy - other 4
sot04382 Cornified envelope formation 4
sot00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 7
nta01230 Biosynthesis of amino acids 7
nta01200 Carbon metabolism 5
nta03018 RNA degradation 3
nta04820 Cytoskeleton in muscle cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 6
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
nta01230 Biosynthesis of amino acids 4
nta00940 Phenylpropanoid biosynthesis 4
nta00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 8
nta01200 Carbon metabolism 6
nta01230 Biosynthesis of amino acids 6
nta03018 RNA degradation 6
nta04820 Cytoskeleton in muscle cells 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00010 Glycolysis / Gluconeogenesis 4
ath00620 Pyruvate metabolism 3
ath01200 Carbon metabolism 3
ath01230 Biosynthesis of amino acids 3
ath00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 12
gma01200 Carbon metabolism 6
gma00030 Pentose phosphate pathway 4
gma01230 Biosynthesis of amino acids 4
gma00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
bra00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 7
bra01200 Carbon metabolism 6
bra01230 Biosynthesis of amino acids 6
bra00030 Pentose phosphate pathway 5
bra00051 Fructose and mannose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00330 Arginine and proline metabolism 3
vvi00250 Alanine, aspartate and glutamate metabolism 2
vvi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 4
ppo00053 Ascorbate and aldarate metabolism 3
ppo00520 Amino sugar and nucleotide sugar metabolism 3
ppo01240 Biosynthesis of cofactors 3
ppo01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00010 Glycolysis / Gluconeogenesis 6
mtr00620 Pyruvate metabolism 5
mtr00071 Fatty acid degradation 3
mtr00350 Tyrosine metabolism 3
mtr00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00270 Cysteine and methionine metabolism 4
ghi00620 Pyruvate metabolism 4
ghi00640 Propanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 4
bna00270 Cysteine and methionine metabolism 4
bna00620 Pyruvate metabolism 4
bna00640 Propanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 4
bna00270 Cysteine and methionine metabolism 4
bna00620 Pyruvate metabolism 4
bna00640 Propanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 4
bna00270 Cysteine and methionine metabolism 4
bna00620 Pyruvate metabolism 4
bna00640 Propanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 4
cit00010 Glycolysis / Gluconeogenesis 4
cit00360 Phenylalanine metabolism 2
cit04075 Plant hormone signal transduction 2
cit00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 9
zma00620 Pyruvate metabolism 5
zma00270 Cysteine and methionine metabolism 3
zma00030 Pentose phosphate pathway 3
zma00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 4
zma00270 Cysteine and methionine metabolism 3
zma00620 Pyruvate metabolism 3
zma00640 Propanoate metabolism 2
zma02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 9
tae00620 Pyruvate metabolism 9
tae00071 Fatty acid degradation 6
tae00350 Tyrosine metabolism 6
tae00592 alpha-Linolenic acid metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 16
tae00620 Pyruvate metabolism 6
tae00071 Fatty acid degradation 4
tae00350 Tyrosine metabolism 4
tae00592 alpha-Linolenic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00010 Glycolysis / Gluconeogenesis 4
sbi00270 Cysteine and methionine metabolism 3
sbi00620 Pyruvate metabolism 2
sbi00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00250 Alanine, aspartate and glutamate metabolism 4
sbi00410 beta-Alanine metabolism 4
sbi00430 Taurine and hypotaurine metabolism 4
sbi00650 Butanoate metabolism 4
sbi00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00010 Glycolysis / Gluconeogenesis 6
bdi01200 Carbon metabolism 4
bdi01230 Biosynthesis of amino acids 4
bdi00620 Pyruvate metabolism 3
bdi00350 Tyrosine metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101252012 101263923 102577778 102604318 107777573 107803141 107806030 827440 100818856 100814897 100803035 103868260 103860904 100250615 18093976 11406365 11427630 121203531 106425371 106445067 106440238 102614633 4328012 4339856 100282503 100193279 123048534 123131987 123402652 123429337 8085169 8085170 100846734
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