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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   CSN4   COP9 signalosome complex subunit 4 
 sly-r.6   CSN4   COP9 signalosome complex subunit 4 
 sly-m.5   CSN4   COP9 signalosome complex subunit 4 
 sot-r.1   102583259   COP9 signalosome complex subunit 4 
 nta-r.1   107790558   COP9 signalosome complex subunit 4 
 nta-r.1   107823129   COP9 signalosome complex subunit 4 
 ath-u.5   COP8   Proteasome component (PCI) domain protein 
 gma-u.5   100819593   COP9 signalosome complex subunit 4 
 gma-u.5   100793394   COP9 signalosome complex subunit 4 
 bra-r.6   103828002   COP9 signalosome complex subunit 4 
 bra-r.6   103848572   COP9 signalosome complex subunit 4 
 vvi-u.5   100254062   COP9 signalosome complex subunit 4 
 ppo-u.5   18096581   COP9 signalosome complex subunit 4 
 ppo-u.5   7463397   COP9 signalosome complex subunit 4 
 mtr-u.5   25480548   COP9 signalosome complex subunit 4 
 ghi-r.1   107957569   COP9 signalosome complex subunit 4 
 ghi-r.1   107921235   COP9 signalosome complex subunit 4 
 ghi-r.1   107916654   COP9 signalosome complex subunit 4 
 bna-r.1   106431714   COP9 signalosome complex subunit 4 
 bna-r.1   106396389   COP9 signalosome complex subunit 4 
 bna-r.1   106349541   COP9 signalosome complex subunit 4 
 cit-r.1   102627923   COP9 signalosome complex subunit 4 
 osa-u.5   4331948   COP9 signalosome complex subunit 4 
 zma-u.5   100192688   COP9 signalosome complex subunit 4 
 tae-r.2   123093120   COP9 signalosome complex subunit 4 
 tae-r.2   123098391   COP9 signalosome complex subunit 4 
 tae-r.2   542907   COP9 signalosome complex subunit 4 
 hvu-r.1   123449430   COP9 signalosome complex subunit 4 
 sbi-r.1   8054249   COP9 signalosome complex subunit 4 
 bdi-r.1   100834438   COP9 signalosome complex subunit 4 
 cre-r.1   CHLRE_11g478240v5   uncharacterized protein 

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Top 50 coexpressed genes to CSN4 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CSN4 (sly-u.5 coexpression data)

CoexMap""


slyCSN4 | Entrez gene ID : 101255392      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 1 2 1 2 2 1 2 1 3 3 1 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
Function COP9 signalosome complex subunit 4
KEGG
GO BP
GO CC
GO:0008180 [list] [network] COP9 signalosome  (12 genes)  IEA  
GO:0005829 [list] [network] cytosol  (916 genes)  IEA  
GO MF
Protein NP_001362561.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  cyto_nucl 3  (predict for NP_001362561.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001362561.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
CSN4
sly-r.6
for
CSN4
sly-m.5
for
CSN4
sot-r.1
for
102583259
nta-r.1
for
107790558
nta-r.1
for
107823129
ath-u.5
for
COP8
gma-u.5
for
100819593
gma-u.5
for
100793394
bra-r.6
for
103828002
bra-r.6
for
103848572
vvi-u.5
for
100254062
ppo-u.5
for
18096581
ppo-u.5
for
7463397
mtr-u.5
for
25480548
ghi-r.1
for
107957569
ghi-r.1
for
107921235
ghi-r.1
for
107916654
bna-r.1
for
106431714
bna-r.1
for
106396389
bna-r.1
for
106349541
cit-r.1
for
102627923
osa-u.5
for
4331948
zma-u.5
for
100192688
tae-r.2
for
123093120
tae-r.2
for
123098391
tae-r.2
for
542907
hvu-r.1
for
123449430
sbi-r.1
for
8054249
bdi-r.1
for
100834438
cre-r.1
for
CHLRE_11g478240v5

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Ortholog ID: 6989
Species sly sot nta nta ath gma gma bra bra vvi ppo ppo mtr ghi ghi ghi bna bna bna cit osa zma tae tae tae hvu sbi bdi cre
Symbol CSN4 LOC102583259 LOC107790558 LOC107823129 COP8 LOC100819593 LOC100793394 LOC103828002 LOC103848572 LOC100254062 LOC18096581 LOC7463397 LOC25480548 LOC107957569 LOC107921235 LOC107910166 LOC106431714 LOC106396389 LOC106349541 LOC102627923 LOC4331948 LOC100192688 LOC123093120 LOC123098391 LOC542907 LOC123449430 LOC8054249 LOC100834438 CHLRE_11g478240v5
Function* COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 Proteasome component (PCI) domain protein COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 8
sly00010 Glycolysis / Gluconeogenesis 2
sly04141 Protein processing in endoplasmic reticulum 2
sly03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 10
nta03082 ATP-dependent chromatin remodeling 3
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03420 Nucleotide excision repair 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00970 Aminoacyl-tRNA biosynthesis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04145 Phagosome 4
ghi03060 Protein export 2
ghi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 5
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
zma03420 Nucleotide excision repair 3
zma03083 Polycomb repressive complex 2
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae04141 Protein processing in endoplasmic reticulum 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 3
sbi03083 Polycomb repressive complex 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101255392 102583259 107790558 107823129 834312 100819593 100793394 103828002 103848572 100254062 18096581 7463397 25480548 107957569 107921235 107910166 106431714 106396389 106349541 102627923 4331948 100192688 123093120 123098391 542907 123449430 8054249 100834438 5722889
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