ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7463397	COP9 signalosome complex subunit 4
ppo-r.4	7463397	COP9 signalosome complex subunit 4
ppo-u.5	18096581	COP9 signalosome complex subunit 4
gma-u.5	100819593	COP9 signalosome complex subunit 4
gma-u.5	100793394	COP9 signalosome complex subunit 4
mtr-u.5	25480548	COP9 signalosome complex subunit 4
ath-u.5	COP8	Proteasome component (PCI) domain protein
vvi-u.5	100254062	COP9 signalosome complex subunit 4
sly-u.5	CSN4	COP9 signalosome complex subunit 4
osa-u.5	4331948	COP9 signalosome complex subunit 4
zma-u.5	100192688	COP9 signalosome complex subunit 4

functional annotation

KEGG

GO BP

GO CC

GO:0008180 [list] [network] COP9 signalosome	(16 genes)	IEA
GO:0005829 [list] [network] cytosol	(1141 genes)	IEA

GO MF

Protein

XP_002320585.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, cyto 3, nucl 1, extr 1, vacu 1

(predict for XP_002320585.1)

Subcellular
localization
TargetP

other 8

(predict for XP_002320585.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7463397 .	ppo-r.4 for 7463397 .	ppo-u.5 for 18096581 .	gma-u.5 for 100819593 .	gma-u.5 for 100793394 .	mtr-u.5 for 25480548 .	ath-u.5 for COP8 .	vvi-u.5 for 100254062 .	sly-u.5 for CSN4 .	osa-u.5 for 4331948 .	zma-u.5 for 100192688 .

Ortholog ID: 6989

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

COP8

CSN4

Function^*

Proteasome component (PCI) domain protein

COP9 signalosome complex subunit 4

uncharacterized protein

COP9 signalosome complex subunit 4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03013	Nucleocytoplasmic transport	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03013	Nucleocytoplasmic transport	2
gma03420	Nucleotide excision repair	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	8
sly00010	Glycolysis / Gluconeogenesis	2
sly04141	Protein processing in endoplasmic reticulum	2
sly03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	5
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	4
zma03420	Nucleotide excision repair	3
zma03083	Polycomb repressive complex	2
zma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra00970	Aminoacyl-tRNA biosynthesis	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	4
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	4
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	3
sbi03083	Polycomb repressive complex	2
sbi03030	DNA replication	2
sbi03410	Base excision repair	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	5
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	10
nta03082	ATP-dependent chromatin remodeling	3
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	11
nta00970	Aminoacyl-tRNA biosynthesis	2
nta03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

834312

100793394

100819593

101255392

4331948

100192688

103828002

103848572

100254062

18096581

7463397

25480548

123098391

123093120

123449430

107910166

107957569

106431714

106396389

5722889

8054249

102583259

102627923

100834438

107823129

107790558

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7463397 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7463397 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	3	2	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7463397 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7463397 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**