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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101267992   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 sly-r.6   101267992   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 sot-r.1   102588903   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 nta-r.1   107802969   pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like 
 nta-r.1   107771122   pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like 
 ath-u.5   OTP85   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100817794   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 bra-r.6   103853967   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 vvi-u.5   100261911   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 mtr-u.5   11417569   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 ghi-r.1   107920547   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 bna-r.1   111203333   pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like 
 bna-r.1   125596212   pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like 
 bna-r.1   106348772   pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like 
 cit-r.1   102615621   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 osa-u.5   4334412   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 zma-u.5   100191499   Pentatricopeptide repeat-containing protein chloroplastic 
 tae-r.2   123123175   pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like 
 tae-r.2   123113656   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 tae-r.2   123105385   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 hvu-r.1   123398817   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 sbi-r.1   8061176   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 bdi-r.1   100842371   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 

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Top 50 coexpressed genes to 101267992 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101267992 (sly-u.5 coexpression data)

CoexMap"101267992"


slyLOC101267992 | Entrez gene ID : 101267992    
Species sly sot nta ath gma bra vvi mtr ghi bna cit osa zma tae hvu sbi bdi cre ppo
Paralog 2 1 2 1 1 1 1 1 1 3 1 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1242 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_025886877.2 [sequence] [blastp]
XP_069153966.1 [sequence] [blastp]
XP_069153968.1 [sequence] [blastp]
XP_069153969.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  E.R. 3,  golg_plas 3  (predict for XP_025886877.2)
plas 4,  E.R. 3,  golg_plas 3  (predict for XP_069153966.1)
plas 4,  E.R. 3,  golg_plas 3  (predict for XP_069153968.1)
plas 4,  E.R. 3,  golg_plas 3  (predict for XP_069153969.1)
Subcellular
localization
TargetP
other 6  (predict for XP_025886877.2)
other 6  (predict for XP_069153966.1)
other 6  (predict for XP_069153968.1)
other 6  (predict for XP_069153969.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101267992
sly-r.6
for
101267992
sot-r.1
for
102588903
nta-r.1
for
107802969
nta-r.1
for
107771122
ath-u.5
for
OTP85
gma-u.5
for
100817794
bra-r.6
for
103853967
vvi-u.5
for
100261911
mtr-u.5
for
11417569
ghi-r.1
for
107920547
bna-r.1
for
111203333
bna-r.1
for
125596212
bna-r.1
for
106348772
cit-r.1
for
102615621
osa-u.5
for
4334412
zma-u.5
for
100191499
tae-r.2
for
123123175
tae-r.2
for
123113656
tae-r.2
for
123105385
hvu-r.1
for
123398817
sbi-r.1
for
8061176
bdi-r.1
for
100842371


Ortholog ID: 11229
Species sly sot nta nta ath gma bra vvi mtr ghi bna bna bna cit osa zma tae tae tae hvu sbi bdi
Symbol LOC101267992 LOC102588903 LOC107802969 LOC107771122 OTP85 LOC100817794 LOC103853967 LOC100261911 LOC11417569 LOC107920547 LOC111203333 LOC125596212 LOC106348772 LOC102615621 LOC4334412 LOC100191499 LOC123123175 LOC123113656 LOC123105385 LOC123398817 LOC8061176 LOC100842371
Function* pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic Pentatricopeptide repeat-containing protein chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 2
hvu01230 Biosynthesis of amino acids 2
hvu01240 Biosynthesis of cofactors 2
hvu01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101267992 102588903 107802969 107771122 814827 100817794 103853967 100261911 11417569 107920547 111203333 125596212 106348772 102615621 4334412 100191499 123123175 123113656 123105385 123398817 8061176 100842371
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