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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123070535   serine/arginine repetitive matrix protein 5 
 tae-r.2   123078943   serine/arginine repetitive matrix protein 2 
 tae-r.2   123061841   probable ATP-dependent RNA helicase DDX46 
 hvu-r.1   123444144   probable ATP-dependent RNA helicase DDX46 
 bdi-r.1   100845593   serine/arginine repetitive matrix protein 2 
 osa-u.5   4324119   uncharacterized LOC4324119 
 zma-u.5   100280368   uncharacterized LOC100280368 
 sbi-r.1   8063079   serine/arginine repetitive matrix protein 2 
 ath-u.5   AT3G48120   serine/arginine-rich splicing factor 
 gma-u.5   100798704   splicing regulatory glutamine/lysine-rich protein 1-like 
 gma-u.5   100795790   uncharacterized LOC100795790 
 sly-u.5   101260908   uncharacterized LOC101260908 
 vvi-u.5   100258813   uncharacterized LOC100258813 
 ppo-u.5   18105827   uncharacterized LOC18105827 
 mtr-u.5   11405588   serine/threonine-protein kinase fray2 
 ghi-r.1   107945936   arginine/serine-rich protein PNISR 
 ghi-r.1   107909069   splicing regulatory glutamine/lysine-rich protein 1 
 bna-r.1   106442668   luc7-like protein 3 
 bna-r.1   106408931   luc7-like protein 3 
 bna-r.1   125596250   luc7-like protein 3 
 sot-r.1   102578259   serine/arginine-rich splicing factor 4 
 cit-r.1   102617483   uncharacterized LOC102617483 
 nta-r.1   107800883   uncharacterized LOC107800883 
 nta-r.1   107818771   uncharacterized LOC107818771 

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Top 50 coexpressed genes to 123070535 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123070535 (tae-r.2 coexpression data)

CoexMap"123070535"


taeLOC123070535 | Entrez gene ID : 123070535    
Species tae hvu bdi osa zma sbi ath gma sly vvi ppo mtr ghi bna sot cit nta cre bra
Paralog 3 1 1 1 1 1 1 2 1 1 1 1 2 3 1 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000380 [list] [network] alternative mRNA splicing, via spliceosome  (10 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13575 genes)  IEA  
GO MF
Protein XP_044349718.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_044349718.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044349718.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123070535
tae-r.2
for
123078943
tae-r.2
for
123061841
hvu-r.1
for
123444144
bdi-r.1
for
100845593
osa-u.5
for
4324119
zma-u.5
for
100280368
sbi-r.1
for
8063079
ath-u.5
for
AT3G48120
gma-u.5
for
100798704
gma-u.5
for
100795790
sly-u.5
for
101260908
vvi-u.5
for
100258813
ppo-u.5
for
18105827
mtr-u.5
for
11405588
ghi-r.1
for
107945936
ghi-r.1
for
107909069
bna-r.1
for
106442668
bna-r.1
for
106408931
bna-r.1
for
125596250
sot-r.1
for
102578259
cit-r.1
for
102617483
nta-r.1
for
107800883
nta-r.1
for
107818771


Ortholog ID: 10136
Species tae tae tae hvu bdi osa zma sbi ath gma gma sly vvi ppo mtr ghi ghi bna bna bna sot cit nta nta
Symbol LOC123070535 LOC123078943 LOC123061841 LOC123444144 LOC100845593 LOC4324119 LOC100280368 LOC8063079 AT3G48120 LOC100798704 LOC100795790 LOC101260908 LOC100258813 LOC18105827 LOC11405588 LOC107945936 LOC107909069 LOC106442668 LOC106408931 LOC125596250 LOC102578259 LOC102617483 LOC107800883 LOC107818771
Function* serine/arginine repetitive matrix protein 5 serine/arginine repetitive matrix protein 2 probable ATP-dependent RNA helicase DDX46 probable ATP-dependent RNA helicase DDX46 serine/arginine repetitive matrix protein 2 uncharacterized LOC4324119 uncharacterized LOC100280368 serine/arginine repetitive matrix protein 2 serine/arginine-rich splicing factor splicing regulatory glutamine/lysine-rich protein 1-like uncharacterized LOC100795790 uncharacterized LOC101260908 uncharacterized LOC100258813 uncharacterized LOC18105827 serine/threonine-protein kinase fray2 arginine/serine-rich protein PNISR splicing regulatory glutamine/lysine-rich protein 1 luc7-like protein 3 luc7-like protein 3 luc7-like protein 3 serine/arginine-rich splicing factor 4 uncharacterized LOC102617483 uncharacterized LOC107800883 uncharacterized LOC107818771
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma00730 Thiamine metabolism 2
gma01240 Biosynthesis of cofactors 2
gma04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03015 mRNA surveillance pathway 3
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123070535 123078943 123061841 123444144 100845593 4324119 100280368 8063079 823967 100798704 100795790 101260908 100258813 18105827 11405588 107945936 107909069 106442668 106408931 125596250 102578259 102617483 107800883 107818771
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