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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102578259   serine/arginine-rich splicing factor 4 
 sly-u.5   101260908   uncharacterized LOC101260908 
 nta-r.1   107818771   uncharacterized LOC107818771 
 nta-r.1   107800883   uncharacterized LOC107800883 
 ath-u.5   AT3G48120   serine/arginine-rich splicing factor 
 gma-u.5   100798704   splicing regulatory glutamine/lysine-rich protein 1-like 
 gma-u.5   100795790   uncharacterized LOC100795790 
 vvi-u.5   100258813   uncharacterized LOC100258813 
 ppo-u.5   18105827   uncharacterized LOC18105827 
 mtr-u.5   11405588   serine/threonine-protein kinase fray2 
 ghi-r.1   107945936   arginine/serine-rich protein PNISR 
 ghi-r.1   107909069   splicing regulatory glutamine/lysine-rich protein 1 
 bna-r.1   106442668   luc7-like protein 3 
 bna-r.1   106408931   luc7-like protein 3 
 bna-r.1   125596250   luc7-like protein 3 
 cit-r.1   102617483   uncharacterized LOC102617483 
 osa-u.5   4324119   uncharacterized LOC4324119 
 zma-u.5   100280368   uncharacterized LOC100280368 
 tae-r.2   123061841   probable ATP-dependent RNA helicase DDX46 
 tae-r.2   123070535   serine/arginine repetitive matrix protein 5 
 tae-r.2   123078943   serine/arginine repetitive matrix protein 2 
 hvu-r.1   123444144   probable ATP-dependent RNA helicase DDX46 
 sbi-r.1   8063079   serine/arginine repetitive matrix protein 2 
 bdi-r.1   100845593   serine/arginine repetitive matrix protein 2 

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Top 50 coexpressed genes to 102578259 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102578259 (sot-r.1 coexpression data)

CoexMap"102578259"


sotLOC102578259 | Entrez gene ID : 102578259    
Species sot sly nta ath gma vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre bra
Paralog 1 1 2 1 2 1 1 1 2 3 1 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000380 [list] [network] alternative mRNA splicing, via spliceosome  (3 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2556 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4349 genes)  IEA  
GO MF
Protein XP_006339980.1 [sequence] [blastp]
XP_015169307.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_006339980.1)
nucl 9  (predict for XP_015169307.1)
Subcellular
localization
TargetP
other 9  (predict for XP_006339980.1)
other 9  (predict for XP_015169307.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102578259
sly-u.5
for
101260908
nta-r.1
for
107818771
nta-r.1
for
107800883
ath-u.5
for
AT3G48120
gma-u.5
for
100798704
gma-u.5
for
100795790
vvi-u.5
for
100258813
ppo-u.5
for
18105827
mtr-u.5
for
11405588
ghi-r.1
for
107945936
ghi-r.1
for
107909069
bna-r.1
for
106442668
bna-r.1
for
106408931
bna-r.1
for
125596250
cit-r.1
for
102617483
osa-u.5
for
4324119
zma-u.5
for
100280368
tae-r.2
for
123061841
tae-r.2
for
123070535
tae-r.2
for
123078943
hvu-r.1
for
123444144
sbi-r.1
for
8063079
bdi-r.1
for
100845593


Ortholog ID: 10136
Species sot sly nta nta ath gma gma vvi ppo mtr ghi ghi bna bna bna cit osa zma tae tae tae hvu sbi bdi
Symbol LOC102578259 LOC101260908 LOC107818771 LOC107800883 AT3G48120 LOC100798704 LOC100795790 LOC100258813 LOC18105827 LOC11405588 LOC107945936 LOC107909069 LOC106442668 LOC106408931 LOC125596250 LOC102617483 LOC4324119 LOC100280368 LOC123061841 LOC123070535 LOC123078943 LOC123444144 LOC8063079 LOC100845593
Function* serine/arginine-rich splicing factor 4 uncharacterized LOC101260908 uncharacterized LOC107818771 uncharacterized LOC107800883 serine/arginine-rich splicing factor splicing regulatory glutamine/lysine-rich protein 1-like uncharacterized LOC100795790 uncharacterized LOC100258813 uncharacterized LOC18105827 serine/threonine-protein kinase fray2 arginine/serine-rich protein PNISR splicing regulatory glutamine/lysine-rich protein 1 luc7-like protein 3 luc7-like protein 3 luc7-like protein 3 uncharacterized LOC102617483 uncharacterized LOC4324119 uncharacterized LOC100280368 probable ATP-dependent RNA helicase DDX46 serine/arginine repetitive matrix protein 5 serine/arginine repetitive matrix protein 2 probable ATP-dependent RNA helicase DDX46 serine/arginine repetitive matrix protein 2 serine/arginine repetitive matrix protein 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03015 mRNA surveillance pathway 3
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma00730 Thiamine metabolism 2
gma01240 Biosynthesis of cofactors 2
gma04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102578259 101260908 107818771 107800883 823967 100798704 100795790 100258813 18105827 11405588 107945936 107909069 106442668 106408931 125596250 102617483 4324119 100280368 123061841 123070535 123078943 123444144 8063079 100845593
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