ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123190838	beta-D-xylosidase 4
tae-r.2	123054987	beta-D-xylosidase 4
tae-r.2	123047180	beta-D-xylosidase 4
hvu-r.1	123428208	beta-D-xylosidase 4-like
bdi-r.1	100820868	beta-D-xylosidase 4
osa-u.5	4337166	beta-D-xylosidase 4
zma-u.5	100279996	Beta-D-xylosidase 4
sbi-r.1	8079556	beta-D-xylosidase 4
ath-u.5	AT5G09700	Glycosyl hydrolase family protein
ath-u.5	BXL3	beta-xylosidase 3
ath-u.5	XYL4	beta-D-xylosidase 4
gma-u.5	100786744	beta-xylosidase/alpha-L-arabinofuranosidase 2
gma-u.5	100798939	beta-xylosidase/alpha-L-arabinofuranosidase 1
gma-u.5	100792948	beta-xylosidase/alpha-L-arabinofuranosidase 1
sly-u.5	XYL1	beta-D-xylosidase 1
sly-u.5	543515	beta-D-xylosidase 2
bra-r.6	103855248	beta-D-xylosidase 4
bra-r.6	103847226	beta-D-xylosidase 3
bra-r.6	103837535	beta-D-xylosidase 4
vvi-u.5	100247929	beta-xylosidase/alpha-L-arabinofuranosidase 2
vvi-u.5	100262089	beta-xylosidase/alpha-L-arabinofuranosidase 2
ppo-u.5	7480784	beta-xylosidase/alpha-L-arabinofuranosidase 2
ppo-u.5	7473018	beta-xylosidase/alpha-L-arabinofuranosidase 2
mtr-u.5	11424908	beta-xylosidase/alpha-L-arabinofuranosidase 1
mtr-u.5	25493289	beta-xylosidase/alpha-L-arabinofuranosidase 2
ghi-r.1	107949186	beta-xylosidase/alpha-L-arabinofuranosidase 2
ghi-r.1	107940743	beta-xylosidase/alpha-L-arabinofuranosidase 2
ghi-r.1	107940742	beta-xylosidase/alpha-L-arabinofuranosidase 2
bna-r.1	106371739	beta-D-xylosidase 4-like
bna-r.1	106348034	beta-D-xylosidase 4
sot-r.1	102598234	beta-xylosidase/alpha-L-arabinofuranosidase 2-like
sot-r.1	102589670	beta-xylosidase/alpha-L-arabinofuranosidase 2-like
cit-r.1	102619285	beta-D-xylosidase 4
nta-r.1	107816752	beta-xylosidase/alpha-L-arabinofuranosidase 2
nta-r.1	107767521	beta-xylosidase/alpha-L-arabinofuranosidase 2-like
nta-r.1	107764751	beta-xylosidase/alpha-L-arabinofuranosidase 2

Top 50 coexpressed genes to 123190838 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123190838 (tae-r.2 coexpression data)

CoexMap"123190838"

[Cytoscape]

Annotation

functional annotation

KEGG

taes00520 [list] [network] Amino sugar and nucleotide sugar metabolism (424 genes)

GO BP

GO:0031222 [list] [network] arabinan catabolic process	(30 genes)	IEA
GO:0045493 [list] [network] xylan catabolic process	(30 genes)	IEA

GO CC

GO:0048046 [list] [network] apoplast

(253 genes)

IEA

GO MF

GO:0009044 [list] [network] xylan 1,4-beta-xylosidase activity	(30 genes)	IEA
GO:0046556 [list] [network] alpha-L-arabinofuranosidase activity	(47 genes)	IEA

Protein

XP_044459503.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, E.R. 1, golg 1

(predict for XP_044459503.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_044459503.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123190838	tae-r.2 for 123054987	tae-r.2 for 123047180	hvu-r.1 for 123428208	bdi-r.1 for 100820868	osa-u.5 for 4337166	zma-u.5 for 100279996	sbi-r.1 for 8079556	ath-u.5 for AT5G09700	ath-u.5 for BXL3	ath-u.5 for XYL4	gma-u.5 for 100786744	gma-u.5 for 100798939	gma-u.5 for 100792948	sly-u.5 for XYL1	sly-u.5 for 543515	bra-r.6 for 103855248	bra-r.6 for 103847226	bra-r.6 for 103837535	vvi-u.5 for 100247929	vvi-u.5 for 100262089	ppo-u.5 for 7480784	ppo-u.5 for 7473018	mtr-u.5 for 11424908	mtr-u.5 for 25493289	ghi-r.1 for 107949186	ghi-r.1 for 107940743	ghi-r.1 for 107940742	bna-r.1 for 106371739	bna-r.1 for 106348034	sot-r.1 for 102598234	sot-r.1 for 102589670	cit-r.1 for 102619285	nta-r.1 for 107816752	nta-r.1 for 107767521	nta-r.1 for 107764751

Ortholog

Ortholog ID: 3726

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

BXL3

XYL4

XYL1

Function^*

beta-D-xylosidase 4

beta-D-xylosidase 4-like

beta-D-xylosidase 4

Beta-D-xylosidase 4

beta-D-xylosidase 4

Glycosyl hydrolase family protein

beta-xylosidase 3

beta-D-xylosidase 4