ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102589670	beta-xylosidase/alpha-L-arabinofuranosidase 2-like
sot-r.1	102598234	beta-xylosidase/alpha-L-arabinofuranosidase 2-like
sly-u.5	XYL1	beta-D-xylosidase 1
sly-u.5	543515	beta-D-xylosidase 2
nta-r.1	107830518	beta-xylosidase/alpha-L-arabinofuranosidase 2-like
nta-r.1	107816752	beta-xylosidase/alpha-L-arabinofuranosidase 2
nta-r.1	107767521	beta-xylosidase/alpha-L-arabinofuranosidase 2-like
ath-u.5	AT5G09700	Glycosyl hydrolase family protein
ath-u.5	BXL3	beta-xylosidase 3
ath-u.5	XYL4	beta-D-xylosidase 4
gma-u.5	100786744	beta-xylosidase/alpha-L-arabinofuranosidase 2
gma-u.5	100798939	beta-xylosidase/alpha-L-arabinofuranosidase 1
gma-u.5	100792948	beta-xylosidase/alpha-L-arabinofuranosidase 1
bra-r.6	103847226	beta-D-xylosidase 3
bra-r.6	103855248	beta-D-xylosidase 4
bra-r.6	103844782	beta-D-xylosidase 4
vvi-u.5	100247929	beta-xylosidase/alpha-L-arabinofuranosidase 2
vvi-u.5	100262089	beta-xylosidase/alpha-L-arabinofuranosidase 2
ppo-u.5	7480784	beta-xylosidase/alpha-L-arabinofuranosidase 2
ppo-u.5	7473018	beta-xylosidase/alpha-L-arabinofuranosidase 2
mtr-u.5	25493289	beta-xylosidase/alpha-L-arabinofuranosidase 2
mtr-u.5	11424908	beta-xylosidase/alpha-L-arabinofuranosidase 1
ghi-r.1	107949186	beta-xylosidase/alpha-L-arabinofuranosidase 2
ghi-r.1	107940742	beta-xylosidase/alpha-L-arabinofuranosidase 2
ghi-r.1	107940743	beta-xylosidase/alpha-L-arabinofuranosidase 2
bna-r.1	106377238	beta-D-xylosidase 4
bna-r.1	106348034	beta-D-xylosidase 4
cit-r.1	102619285	beta-D-xylosidase 4
osa-u.5	4337166	beta-D-xylosidase 4
zma-u.5	100279996	Beta-D-xylosidase 4
tae-r.2	123047180	beta-D-xylosidase 4
tae-r.2	123054987	beta-D-xylosidase 4
tae-r.2	123190838	beta-D-xylosidase 4
hvu-r.1	123428208	beta-D-xylosidase 4-like
sbi-r.1	8079556	beta-D-xylosidase 4
bdi-r.1	100820868	beta-D-xylosidase 4

Top 50 coexpressed genes to 102589670 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102589670 (sot-r.1 coexpression data)

CoexMap"102589670"

[Cytoscape]

Annotation

functional annotation

KEGG

sot00520 [list] [network] Amino sugar and nucleotide sugar metabolism (135 genes)

GO BP

GO:0031222 [list] [network] arabinan catabolic process	(9 genes)	IEA
GO:0045493 [list] [network] xylan catabolic process	(9 genes)	IEA

GO CC

GO:0048046 [list] [network] apoplast

(78 genes)

IEA

GO MF

GO:0009044 [list] [network] xylan 1,4-beta-xylosidase activity	(9 genes)	IEA
GO:0046556 [list] [network] alpha-L-arabinofuranosidase activity	(13 genes)	IEA

Protein

XP_006351808.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 3, E.R. 2, nucl_plas 2, cysk_plas 2

(predict for XP_006351808.1)

Subcellular
localization
TargetP

scret 5

(predict for XP_006351808.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102589670	sot-r.1 for 102598234	sly-u.5 for XYL1	sly-u.5 for 543515	nta-r.1 for 107830518	nta-r.1 for 107816752	nta-r.1 for 107767521	ath-u.5 for AT5G09700	ath-u.5 for BXL3	ath-u.5 for XYL4	gma-u.5 for 100786744	gma-u.5 for 100798939	gma-u.5 for 100792948	bra-r.6 for 103847226	bra-r.6 for 103855248	bra-r.6 for 103844782	vvi-u.5 for 100247929	vvi-u.5 for 100262089	ppo-u.5 for 7480784	ppo-u.5 for 7473018	mtr-u.5 for 25493289	mtr-u.5 for 11424908	ghi-r.1 for 107949186	ghi-r.1 for 107940742	ghi-r.1 for 107940743	bna-r.1 for 106377238	bna-r.1 for 106348034	cit-r.1 for 102619285	osa-u.5 for 4337166	zma-u.5 for 100279996	tae-r.2 for 123047180	tae-r.2 for 123054987	tae-r.2 for 123190838	hvu-r.1 for 123428208	sbi-r.1 for 8079556	bdi-r.1 for 100820868

Ortholog

Ortholog ID: 3726

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

XYL1

BXL3

XYL4

Function^*

beta-xylosidase/alpha-L-arabinofuranosidase 2-like

beta-D-xylosidase 1

beta-D-xylosidase 2