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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   NRPD1B   nuclear RNA polymerase D1B 
 ath-u.5   NRPD1B   nuclear RNA polymerase D1B 
 ath-r.7   NRPD1B   nuclear RNA polymerase D1B 
 ath-m.9   NRPD1B   nuclear RNA polymerase D1B 
 ath-e.2   NRPD1B   nuclear RNA polymerase D1B 
 ath-m.4.hor   NRPD1B   nuclear RNA polymerase D1B 
 ath-m.4.lig   NRPD1B   nuclear RNA polymerase D1B 
 ath-m.4.str   NRPD1B   nuclear RNA polymerase D1B 
 ath-m.4.tis   NRPD1B   nuclear RNA polymerase D1B 
 bna-r.1   106420756   DNA-directed RNA polymerase V subunit 1-like 
 bna-r.1   106438049   DNA-directed RNA polymerase V subunit 1 
 ghi-r.1   107928093   DNA-directed RNA polymerase V subunit 1 
 ghi-r.1   107962354   DNA-directed RNA polymerase V subunit 1 
 cit-r.1   102606620   DNA-directed RNA polymerase V subunit 1 
 gma-u.5   100801412   DNA-directed RNA polymerase V subunit 1 
 gma-u.5   100785844   DNA-directed RNA polymerase V subunit 1 
 vvi-u.5   100266900   DNA-directed RNA polymerase V subunit 1 
 ppo-u.5   7460237   DNA-directed RNA polymerase V subunit 1 
 mtr-u.5   11445115   DNA-directed RNA polymerase V subunit 1 
 sly-u.5   778258   DNA-directed RNA polymerase V subunit 1 
 nta-r.1   107772945   DNA-directed RNA polymerase V subunit 1 
 nta-r.1   107779009   DNA-directed RNA polymerase V subunit 1 
 osa-u.5   4328330   DNA-directed RNA polymerase V subunit 1 
 zma-u.5   103654914   DNA-directed RNA polymerase V subunit 1 
 tae-r.2   123143843   DNA-directed RNA polymerase V subunit 1 
 tae-r.2   123136337   DNA-directed RNA polymerase V subunit 1 
 tae-r.2   123132286   DNA-directed RNA polymerase V subunit 1 
 hvu-r.1   123401596   DNA-directed RNA polymerase V subunit 1 
 sbi-r.1   8069982   DNA-directed RNA polymerase V subunit 1 
 bdi-r.1   100825545   DNA-directed RNA polymerase V subunit 1 

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Top 50 coexpressed genes to NRPD1B (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NRPD1B (ath-m.4.bio coexpression data)

CoexMap"818591"


athNRPD1B | Entrez gene ID : 818591      
Species ath bna ghi cit gma vvi ppo mtr sly nta osa zma tae hvu sbi bdi sot cre bra
Paralog 9 2 2 1 2 1 1 1 1 2 1 1 3 1 1 1 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03020 [list] [network] RNA polymerase (52 genes)
GO BP
GO:0030422 [list] [network] siRNA processing  (31 genes)  IGI IMP  
GO:0035194 [list] [network] regulatory ncRNA-mediated post-transcriptional gene silencing  (93 genes)  IMP  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IMP  
GO CC
GO:0000418 [list] [network] RNA polymerase IV complex  (16 genes)  IDA  
GO:0000419 [list] [network] RNA polymerase V complex  (21 genes)  IDA  
GO:0030880 [list] [network] RNA polymerase complex  (53 genes)  IDA  
GO:0016604 [list] [network] nuclear body  (91 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (9 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001323985.1 [sequence] [blastp]
NP_181532.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001323985.1)
nucl 10  (predict for NP_181532.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001323985.1)
other 7  (predict for NP_181532.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
NRPD1B
ath-u.5
for
NRPD1B
ath-r.7
for
NRPD1B
ath-m.9
for
NRPD1B
ath-e.2
for
NRPD1B
ath-m.4.hor
for
NRPD1B
ath-m.4.lig
for
NRPD1B
ath-m.4.str
for
NRPD1B
ath-m.4.tis
for
NRPD1B
bna-r.1
for
106420756
bna-r.1
for
106438049
ghi-r.1
for
107928093
ghi-r.1
for
107962354
cit-r.1
for
102606620
gma-u.5
for
100801412
gma-u.5
for
100785844
vvi-u.5
for
100266900
ppo-u.5
for
7460237
mtr-u.5
for
11445115
sly-u.5
for
778258
nta-r.1
for
107772945
nta-r.1
for
107779009
osa-u.5
for
4328330
zma-u.5
for
103654914
tae-r.2
for
123143843
tae-r.2
for
123136337
tae-r.2
for
123132286
hvu-r.1
for
123401596
sbi-r.1
for
8069982
bdi-r.1
for
100825545


Ortholog ID: 10708
Species ath bna bna ghi ghi cit gma gma vvi ppo mtr sly nta nta osa zma tae tae tae hvu sbi bdi
Symbol NRPD1B LOC106420756 LOC106438049 LOC107928093 LOC107962354 LOC102606620 LOC100801412 LOC100785844 LOC100266900 LOC7460237 LOC11445115 LOC778258 LOC107772945 LOC107779009 LOC4328330 LOC103654914 LOC123143843 LOC123136337 LOC123132286 LOC123401596 LOC8069982 LOC100825545
Function* nuclear RNA polymerase D1B DNA-directed RNA polymerase V subunit 1-like DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 3
ath03440 Homologous recombination 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae04075 Plant hormone signal transduction 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03082 ATP-dependent chromatin remodeling 3
sbi03040 Spliceosome 3
sbi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818591 106420756 106438049 107928093 107962354 102606620 100801412 100785844 100266900 7460237 11445115 778258 107772945 107779009 4328330 103654914 123143843 123136337 123132286 123401596 8069982 100825545
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