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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7460237   DNA-directed RNA polymerase V subunit 1 
 ppo-r.4   7460237   DNA-directed RNA polymerase V subunit 1 
 gma-u.5   100801412   DNA-directed RNA polymerase V subunit 1 
 gma-u.5   100785844   DNA-directed RNA polymerase V subunit 1 
 mtr-u.5   11445115   DNA-directed RNA polymerase V subunit 1 
 ath-u.5   NRPD1B   nuclear RNA polymerase D1B 
 vvi-u.5   100266900   DNA-directed RNA polymerase V subunit 1 
 sly-u.5   778258   DNA-directed RNA polymerase V subunit 1 
 osa-u.5   4328330   DNA-directed RNA polymerase V subunit 1 
 zma-u.5   103654914   DNA-directed RNA polymerase V subunit 1 

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Top 50 coexpressed genes to 7460237 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7460237 (ppo-u.5 coexpression data)

CoexMap"7460237"


ppoLOC7460237 | Entrez gene ID : 7460237    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03020 [list] [network] RNA polymerase (53 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (264 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (23 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (2205 genes)  IEA  
Protein XP_052307373.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_052307373.1)
Subcellular
localization
TargetP
other 8  (predict for XP_052307373.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7460237

.
ppo-r.4
for
7460237

.
gma-u.5
for
100801412

.
gma-u.5
for
100785844

.
mtr-u.5
for
11445115

.
ath-u.5
for
NRPD1B

.
vvi-u.5
for
100266900

.
sly-u.5
for
778258

.
osa-u.5
for
4328330

.
zma-u.5
for
103654914

.


Ortholog ID: 10708
Species ath gma gma sly osa zma vvi ppo mtr tae tae hvu ghi ghi bna bna sbi cit bdi nta nta
Symbol NRPD1B LOC100801412 LOC100785844 LOC778258 LOC4328330 LOC103654914 LOC100266900 LOC7460237 LOC11445115 LOC123136337 LOC123132286 LOC123401596 LOC107928093 LOC107962354 LOC106420756 LOC106438049 LOC8069982 LOC102606620 LOC100825545 LOC107772945 LOC107779009
Function* nuclear RNA polymerase D1B DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1-like DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1 DNA-directed RNA polymerase V subunit 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 3
ath03440 Homologous recombination 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae04075 Plant hormone signal transduction 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03082 ATP-dependent chromatin remodeling 3
sbi03040 Spliceosome 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818591 100801412 100785844 778258 4328330 103654914 100266900 7460237 11445115 123136337 123132286 123401596 107928093 107962354 106420756 106438049 8069982 102606620 100825545 107772945 107779009
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