ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	AT3G12290	Amino acid dehydrogenase family protein
ath-u.5	AT3G12290	Amino acid dehydrogenase family protein
ath-r.7	AT3G12290	Amino acid dehydrogenase family protein
ath-m.9	AT3G12290	Amino acid dehydrogenase family protein
ath-e.2	AT3G12290	Amino acid dehydrogenase family protein
ath-m.4.hor	AT3G12290	Amino acid dehydrogenase family protein
ath-m.4.lig	AT3G12290	Amino acid dehydrogenase family protein
ath-m.4.str	AT3G12290	Amino acid dehydrogenase family protein
ath-m.4.tis	AT3G12290	Amino acid dehydrogenase family protein
ath-u.5	AT2G38660	Amino acid dehydrogenase family protein
ath-u.5	EMB3127	Amino acid dehydrogenase family protein
bra-r.6	103859439	bifunctional protein FolD 2
bra-r.6	103865677	bifunctional protein FolD 1, mitochondrial
bra-r.6	103870259	bifunctional protein FolD 2
bna-r.1	125593217	bifunctional protein FolD 4, chloroplastic-like
bna-r.1	106402651	bifunctional protein FolD 1, mitochondrial
bna-r.1	106365527	bifunctional protein FolD 4, chloroplastic
ghi-r.1	107915702	bifunctional protein FolD 4, chloroplastic
ghi-r.1	107953178	bifunctional protein FolD 1, mitochondrial
ghi-r.1	107954325	bifunctional protein FolD 1, mitochondrial
cit-r.1	127901245	bifunctional protein FolD 4, chloroplastic-like
cit-r.1	102625176	bifunctional protein FolD 1, mitochondrial
cit-r.1	102612232	bifunctional protein FolD 4, chloroplastic
gma-u.5	100792682	bifunctional protein FolD 2
gma-u.5	100819231	bifunctional protein FolD-like
vvi-u.5	100255621	bifunctional protein FolD 2
vvi-u.5	100249948	bifunctional protein FolD 4, chloroplastic
ppo-u.5	7494065	bifunctional protein FolD 4, chloroplastic
ppo-u.5	18100049	bifunctional protein FolD 1, mitochondrial
ppo-u.5	112329146	bifunctional protein FolD 2
mtr-u.5	11415327	bifunctional protein FolD 1, mitochondrial
mtr-u.5	11426920	bifunctional protein FolD 4, chloroplastic
sly-u.5	101258003	bifunctional protein FolD 4, chloroplastic
sly-u.5	101249506	bifunctional protein FolD 2
sly-u.5	101245680	bifunctional protein FolD 1, mitochondrial
sot-r.1	102585419	bifunctional protein FolD 2
sot-r.1	102582792	bifunctional protein FolD 4, chloroplastic
sot-r.1	102578570	bifunctional protein FolD 1, mitochondrial-like
nta-r.1	107785718	bifunctional protein FolD 1, mitochondrial-like
nta-r.1	107803013	bifunctional protein FolD 2
nta-r.1	107804879	bifunctional protein FolD 2-like
osa-u.5	4346746	bifunctional protein FolD 1, mitochondrial
osa-u.5	4337829	bifunctional protein FolD 2
osa-u.5	4328117	bifunctional protein FolD 4, chloroplastic
zma-u.5	100216752	uncharacterized LOC100216752
zma-u.5	100272563	uncharacterized LOC100272563
zma-u.5	542656	bifunctional protein FolD 4, chloroplastic
tae-r.2	123111727	bifunctional protein FolD 1, mitochondrial
tae-r.2	123103510	bifunctional protein FolD 1, mitochondrial
tae-r.2	123112780	bifunctional protein FolD 2
hvu-r.1	123452101	bifunctional protein FolD 1, mitochondrial-like
hvu-r.1	123425559	bifunctional protein FolD 2
hvu-r.1	123402225	bifunctional protein FolD 4, chloroplastic
sbi-r.1	8069506	bifunctional protein FolD 2
sbi-r.1	8068256	bifunctional protein FolD 4, chloroplastic
sbi-r.1	8054570	bifunctional protein FolD 1, mitochondrial
bdi-r.1	100830842	bifunctional protein FolD 4, chloroplastic
bdi-r.1	100831025	bifunctional protein FolD 2
bdi-r.1	100823925	bifunctional protein FolD 1, mitochondrial
cre-r.1	CHLRE_03g182450v5	uncharacterized protein
cre-r.1	CHLRE_17g698450v5	uncharacterized protein

Top 50 coexpressed genes to AT3G12290 (ath-m.4.bio coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G12290 (ath-m.4.bio coexpression data)

CoexMap"820409"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0046653 [list] [network] tetrahydrofolate metabolic process

(9 genes)

IMP

GO CC

GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA ISM
GO:0005737 [list] [network] cytoplasm	(14000 genes)	IDA

GO MF

Protein

NP_187837.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, cysk 3, cyto_nucl 3, cyto_pero 3, cyto_E.R. 3

(predict for NP_187837.1)

Subcellular
localization
TargetP

other 7, chlo 3

(predict for NP_187837.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for AT3G12290	ath-u.5 for AT3G12290	ath-r.7 for AT3G12290	ath-m.9 for AT3G12290	ath-e.2 for AT3G12290	ath-m.4.hor for AT3G12290	ath-m.4.lig for AT3G12290	ath-m.4.str for AT3G12290	ath-m.4.tis for AT3G12290	ath-u.5 for AT2G38660	ath-u.5 for EMB3127	bra-r.6 for 103859439	bra-r.6 for 103865677	bra-r.6 for 103870259	bna-r.1 for 125593217	bna-r.1 for 106402651	bna-r.1 for 106365527	ghi-r.1 for 107915702	ghi-r.1 for 107953178	ghi-r.1 for 107954325	cit-r.1 for 127901245	cit-r.1 for 102625176	cit-r.1 for 102612232	gma-u.5 for 100792682	gma-u.5 for 100819231	vvi-u.5 for 100255621	vvi-u.5 for 100249948	ppo-u.5 for 7494065	ppo-u.5 for 18100049	ppo-u.5 for 112329146	mtr-u.5 for 11415327	mtr-u.5 for 11426920	sly-u.5 for 101258003	sly-u.5 for 101249506	sly-u.5 for 101245680	sot-r.1 for 102585419	sot-r.1 for 102582792	sot-r.1 for 102578570	nta-r.1 for 107785718	nta-r.1 for 107803013	nta-r.1 for 107804879	osa-u.5 for 4346746	osa-u.5 for 4337829	osa-u.5 for 4328117	zma-u.5 for 100216752	zma-u.5 for 100272563	zma-u.5 for 542656	tae-r.2 for 123111727	tae-r.2 for 123103510	tae-r.2 for 123112780	hvu-r.1 for 123452101	hvu-r.1 for 123425559	hvu-r.1 for 123402225	sbi-r.1 for 8069506	sbi-r.1 for 8068256	sbi-r.1 for 8054570	bdi-r.1 for 100830842	bdi-r.1 for 100831025	bdi-r.1 for 100823925	cre-r.1 for CHLRE_03g182450v5	cre-r.1 for CHLRE_17g698450v5

Ortholog

Ortholog ID: 1197

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Amino acid dehydrogenase family protein

bifunctional protein FolD 1, mitochondrial

bifunctional protein FolD 2