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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   DDI1   ubiquitin family protein 
 ath-u.5   DDI1   ubiquitin family protein 
 ath-r.7   DDI1   ubiquitin family protein 
 ath-m.9   DDI1   ubiquitin family protein 
 ath-e.2   DDI1   ubiquitin family protein 
 ath-m.4.hor   DDI1   ubiquitin family protein 
 ath-m.4.lig   DDI1   ubiquitin family protein 
 ath-m.4.str   DDI1   ubiquitin family protein 
 ath-m.4.tis   DDI1   ubiquitin family protein 
 gma-u.5   100782198   DNA damage-inducible protein 1-like 
 gma-u.5   100779464   protein DNA-DAMAGE INDUCIBLE 1 
 vvi-u.5   100248128   protein DNA-DAMAGE INDUCIBLE 1 
 ppo-u.5   18103542   protein DNA-DAMAGE INDUCIBLE 1 
 ppo-u.5   7457658   protein DNA-DAMAGE INDUCIBLE 1 
 mtr-u.5   112420467   protein DNA-DAMAGE INDUCIBLE 1 
 sly-u.5   101055529   Hop-interacting protein THI111 
 osa-u.5   4328632   protein DNA-DAMAGE INDUCIBLE 1 
 zma-u.5   103654835   protein DNA-DAMAGE INDUCIBLE 1 

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Top 50 coexpressed genes to DDI1 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DDI1 (ath-m.4.bio coexpression data)

CoexMap"820522"


athDDI1 | Entrez gene ID : 820522      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006508 [list] [network] proteolysis  (361 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (8 genes)  IDA  
GO:0004190 [list] [network] aspartic-type endopeptidase activity  (27 genes)  IEA  
Protein NP_001189876.1 [sequence] [blastp]
NP_001189877.1 [sequence] [blastp]
NP_566451.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 4  (predict for NP_001189876.1)
cyto 6,  chlo 4  (predict for NP_001189877.1)
cyto 6,  chlo 4  (predict for NP_566451.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001189876.1)
other 8  (predict for NP_001189877.1)
other 8  (predict for NP_566451.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
DDI1
ath-u.5
for
DDI1
ath-r.7
for
DDI1
ath-m.9
for
DDI1
ath-e.2
for
DDI1
ath-m.4.hor
for
DDI1
ath-m.4.lig
for
DDI1
ath-m.4.str
for
DDI1
ath-m.4.tis
for
DDI1
gma-u.5
for
100782198
gma-u.5
for
100779464
vvi-u.5
for
100248128
ppo-u.5
for
18103542
ppo-u.5
for
7457658
mtr-u.5
for
112420467
sly-u.5
for
101055529
osa-u.5
for
4328632
zma-u.5
for
103654835


Ortholog ID: 7205
Species ath bra bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol DDI1 LOC103849757 LOC103859506 LOC106377526 LOC106389111 LOC107895161 LOC107903408 LOC102607231 LOC100782198 LOC100779464 LOC100248128 LOC7457658 LOC18103542 LOC112420467 LOC101055529 LOC102603745 LOC107773217 LOC107788650 LOC4328632 LOC103654835 LOC123136690 LOC123132610 LOC123401728 LOC8082906 LOC100830741 CHLRE_10g447300v5
Function* ubiquitin family protein protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 DNA damage-inducible protein 1-like protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 Hop-interacting protein THI111 DNA damage-inducible protein 1 protein DNA-DAMAGE INDUCIBLE 1-like protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 DNA damage-inducible protein 1 DNA damage-inducible protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 10
ath00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra00230 Purine metabolism 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 4
bra04141 Protein processing in endoplasmic reticulum 2
bra00020 Citrate cycle (TCA cycle) 2
bra00785 Lipoic acid metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00062 Fatty acid elongation 6
ghi04626 Plant-pathogen interaction 6
ghi00620 Pyruvate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00280 Valine, leucine and isoleucine degradation 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 4
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00020 Citrate cycle (TCA cycle) 3
nta01200 Carbon metabolism 3
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 4
cre04120 Ubiquitin mediated proteolysis 4
cre03050 Proteasome 4
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820522 103849757 103859506 106377526 106389111 107895161 107903408 102607231 100782198 100779464 100248128 7457658 18103542 112420467 101055529 102603745 107773217 107788650 4328632 103654835 123136690 123132610 123401728 8082906 100830741 5723857
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