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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   EMB2729   Alpha amylase family protein 
 ath-u.5   EMB2729   Alpha amylase family protein 
 ath-r.7   EMB2729   Alpha amylase family protein 
 ath-m.9   EMB2729   Alpha amylase family protein 
 ath-e.2   EMB2729   Alpha amylase family protein 
 ath-m.4.hor   EMB2729   Alpha amylase family protein 
 ath-m.4.lig   EMB2729   Alpha amylase family protein 
 ath-m.4.str   EMB2729   Alpha amylase family protein 
 ath-m.4.tis   EMB2729   Alpha amylase family protein 
 bra-r.6   103869322   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 bna-r.1   125598519   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 bna-r.1   106432370   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 bna-r.1   106382010   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 ghi-r.1   107932778   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 ghi-r.1   107903463   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 
 cit-r.1   102618514   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 gma-u.5   100780600   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 vvi-u.5   100260732   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 ppo-u.5   7487520   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 mtr-u.5   25488992   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 sly-u.5   101268012   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 sot-r.1   102603708   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 
 nta-r.1   107781906   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 nta-r.1   107794628   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 
 osa-u.5   4341008   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 zma-u.5   100136878   starch branching enzyme III 
 tae-r.2   123162636   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 tae-r.2   123169852   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 tae-r.2   101290591   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 hvu-r.1   123410814   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 sbi-r.1   8082518   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 bdi-r.1   100826523   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 

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Top 50 coexpressed genes to EMB2729 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB2729 (ath-m.4.bio coexpression data)

CoexMap"821589"


athEMB2729 | Entrez gene ID : 821589      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00500 [list] [network] Starch and sucrose metabolism (172 genes)
GO BP
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO:0005975 [list] [network] carbohydrate metabolic process  (601 genes)  IMP  
GO:0009791 [list] [network] post-embryonic development  (1579 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  IDA  
GO MF
Protein NP_001154629.1 [sequence] [blastp]
NP_001189940.1 [sequence] [blastp]
NP_188679.2 [sequence] [blastp]
Subcellular
localization
wolf
pero 4,  chlo 3,  mito 1,  nucl 1,  cyto 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001154629.1)
pero 4,  chlo 3,  mito 1,  nucl 1,  cyto 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001189940.1)
pero 4,  chlo 3,  mito 1,  nucl 1,  cyto 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1  (predict for NP_188679.2)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001154629.1)
chlo 6  (predict for NP_001189940.1)
chlo 6  (predict for NP_188679.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
EMB2729
ath-u.5
for
EMB2729
ath-r.7
for
EMB2729
ath-m.9
for
EMB2729
ath-e.2
for
EMB2729
ath-m.4.hor
for
EMB2729
ath-m.4.lig
for
EMB2729
ath-m.4.str
for
EMB2729
ath-m.4.tis
for
EMB2729
bra-r.6
for
103869322
bna-r.1
for
125598519
bna-r.1
for
106432370
bna-r.1
for
106382010
ghi-r.1
for
107932778
ghi-r.1
for
107903463
cit-r.1
for
102618514
gma-u.5
for
100780600
vvi-u.5
for
100260732
ppo-u.5
for
7487520
mtr-u.5
for
25488992
sly-u.5
for
101268012
sot-r.1
for
102603708
nta-r.1
for
107781906
nta-r.1
for
107794628
osa-u.5
for
4341008
zma-u.5
for
100136878
tae-r.2
for
123162636
tae-r.2
for
123169852
tae-r.2
for
101290591
hvu-r.1
for
123410814
sbi-r.1
for
8082518
bdi-r.1
for
100826523


Ortholog ID: 9497
Species ath bra bna bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol EMB2729 LOC103869322 LOC125598519 LOC106432370 LOC125608819 LOC107932778 LOC107903463 LOC102618514 LOC100780600 LOC100260732 LOC7487520 LOC25488992 LOC101268012 LOC102603708 LOC107781906 LOC107794628 LOC4341008 LOC100136878 LOC123162636 LOC123169852 LOC101290591 LOC123410814 LOC8082518 LOC100826523
Function* Alpha amylase family protein 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic starch branching enzyme III 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna03018 RNA degradation 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03020 RNA polymerase 3
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821589 103869322 125598519 106432370 125608819 107932778 107903463 102618514 100780600 100260732 7487520 25488992 101268012 102603708 107781906 107794628 4341008 100136878 123162636 123169852 101290591 123410814 8082518 100826523
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