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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107932778   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 ath-u.5   EMB2729   Alpha amylase family protein 
 gma-u.5   100780600   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 vvi-u.5   100260732   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 ppo-u.5   7487520   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 mtr-u.5   25488992   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 sly-u.5   101268012   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 osa-u.5   4341008   1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 
 zma-u.5   100136878   starch branching enzyme III 

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Top 50 coexpressed genes to 107932778 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107932778 (ghi-r.1 coexpression data)

CoexMap"107932778"


ghiLOC107932778 | Entrez gene ID : 107932778    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00500 [list] [network] Starch and sucrose metabolism (349 genes)
GO BP
GO:0005978 [list] [network] glycogen biosynthetic process  (27 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0003844 [list] [network] 1,4-alpha-glucan branching enzyme activity  (12 genes)  IEA  
GO:0004553 [list] [network] hydrolase activity, hydrolyzing O-glycosyl compounds  (944 genes)  IEA  
GO:0043169 [list] [network] cation binding  (4837 genes)  IEA  
Protein XP_016720363.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  pero 4,  cyto 1,  mito 1  (predict for XP_016720363.2)
Subcellular
localization
TargetP
chlo 4  (predict for XP_016720363.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107932778
ath-u.5
for
EMB2729
gma-u.5
for
100780600
vvi-u.5
for
100260732
ppo-u.5
for
7487520
mtr-u.5
for
25488992
sly-u.5
for
101268012
osa-u.5
for
4341008
zma-u.5
for
100136878


Ortholog ID: 9497
Species ghi ghi ath bra bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107932778 LOC107903463 EMB2729 LOC103869322 LOC125598519 LOC106432370 LOC102618514 LOC100780600 LOC100260732 LOC7487520 LOC25488992 LOC101268012 LOC102603708 LOC107781906 LOC107794628 LOC4341008 LOC100136878 LOC123162636 LOC123169852 LOC123410814 LOC8082518 LOC100826523
Function* 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like Alpha amylase family protein 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic starch branching enzyme III 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03020 RNA polymerase 3
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107932778 107903463 821589 103869322 125598519 106432370 102618514 100780600 100260732 7487520 25488992 101268012 102603708 107781906 107794628 4341008 100136878 123162636 123169852 123410814 8082518 100826523
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