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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   BBC1   breast basic conserved 1 
 ath-u.5   BBC1   breast basic conserved 1 
 ath-r.7   BBC1   breast basic conserved 1 
 ath-m.9   BBC1   breast basic conserved 1 
 ath-e.2   BBC1   breast basic conserved 1 
 ath-m.4.hor   BBC1   breast basic conserved 1 
 ath-m.4.lig   BBC1   breast basic conserved 1 
 ath-m.4.str   BBC1   breast basic conserved 1 
 ath-m.4.tis   BBC1   breast basic conserved 1 
 ath-u.5   AT5G23900   Ribosomal protein L13e family protein 
 bra-r.6   103874976   60S ribosomal protein L13-1 
 bra-r.6   103873508   60S ribosomal protein L13-2 
 bra-r.6   103865696   60S ribosomal protein L13-3 
 bna-r.1   111210580   60S ribosomal protein L13-1-like 
 bna-r.1   106347447   60S ribosomal protein L13-1-like 
 bna-r.1   106365518   60S ribosomal protein L13-2-like 
 ghi-r.1   107912654   60S ribosomal protein L13-1 
 ghi-r.1   107915465   60S ribosomal protein L13-1 
 ghi-r.1   107954756   60S ribosomal protein L13-1 
 cit-r.1   102614464   60S ribosomal protein L13-1 
 cit-r.1   102613171   60S ribosomal protein L13-1 
 gma-u.5   100305489   60S ribosomal protein L13-1 
 gma-u.5   100805957   60S ribosomal protein L13-1 
 gma-u.5   100782333   60S ribosomal protein L13-1-like 
 vvi-u.5   100257471   large ribosomal subunit protein eL13z 
 vvi-u.5   100246745   large ribosomal subunit protein eL13z 
 ppo-u.5   18094068   60S ribosomal protein L13-1 
 ppo-u.5   7491903   60S ribosomal protein L13-1 
 ppo-u.5   7473881   60S ribosomal protein L13-1 
 mtr-u.5   11410980   60S ribosomal protein L13-1 
 mtr-u.5   25482128   60S ribosomal protein L13-1 
 mtr-u.5   11426640   60S ribosomal protein L13-1 
 sly-u.5   101264241   large ribosomal subunit protein eL13z 
 sly-u.5   101262297   large ribosomal subunit protein eL13z 
 sot-r.1   RPL13   ribosomal protein L13 
 sot-r.1   102591658   60S ribosomal protein L13-1-like 
 sot-r.1   102589955   60S ribosomal protein L13-1-like 
 nta-r.1   107822051   large ribosomal subunit protein eL13y 
 nta-r.1   107805709   large ribosomal subunit protein eL13z-like 
 nta-r.1   107802841   large ribosomal subunit protein eL13z 
 osa-u.5   4339923   60S ribosomal protein L13-1 
 osa-u.5   4333306   large ribosomal subunit protein eL13y 
 zma-u.5   100282254   60S ribosomal protein L13-2 
 zma-u.5   100273645   60S ribosomal protein L13 
 zma-u.5   100286371   60S ribosomal protein L13 
 tae-r.2   123131777   60S ribosomal protein L13-1 
 tae-r.2   123135654   60S ribosomal protein L13-1 
 tae-r.2   123165450   60S ribosomal protein L13-1 
 hvu-r.1   123401771   60S ribosomal protein L13-1-like 
 hvu-r.1   123407934   60S ribosomal protein L13-1-like 
 sbi-r.1   8080961   60S ribosomal protein L13-2 
 sbi-r.1   8064692   60S ribosomal protein L13-2 
 sbi-r.1   8079817   60S ribosomal protein L13-2 
 bdi-r.1   100830340   60S ribosomal protein L13-1 
 bdi-r.1   100825017   60S ribosomal protein L13-1 
 cre-r.1   CHLRE_14g630100v5   ribosomal protein L13 

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Top 50 coexpressed genes to BBC1 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to BBC1 (ath-m.4.bio coexpression data)

CoexMap"824062"


athBBC1 | Entrez gene ID : 824062      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 2 3 2 3 3 2 3 3 2 3 3 2 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0006412 [list] [network] translation  (926 genes)  IEA TAS  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (124 genes)  HDA  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0005840 [list] [network] ribosome  (328 genes)  TAS  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0009505 [list] [network] plant-type cell wall  (504 genes)  HDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  RCA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  ISS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_001030831.1 [sequence] [blastp]
NP_001078260.1 [sequence] [blastp]
NP_001078261.1 [sequence] [blastp]
NP_001327179.1 [sequence] [blastp]
NP_001327180.1 [sequence] [blastp]
NP_190470.1 [sequence] [blastp]
NP_850672.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  cyto 1,  mito 1,  pero 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1  (predict for NP_001030831.1)
chlo 7,  nucl 1,  cyto 1,  pero 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1  (predict for NP_001078260.1)
chlo 6,  nucl 3,  chlo_mito 3  (predict for NP_001078261.1)
chlo 6,  nucl 1,  cyto 1,  mito 1,  pero 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1  (predict for NP_001327179.1)
chlo 6,  nucl 1,  cyto 1,  mito 1,  pero 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1  (predict for NP_001327180.1)
chlo 6,  nucl 1,  cyto 1,  mito 1,  pero 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1  (predict for NP_190470.1)
chlo 6,  nucl 1,  cyto 1,  mito 1,  pero 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1  (predict for NP_850672.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for NP_001030831.1)
other 6,  chlo 3  (predict for NP_001078260.1)
other 5,  chlo 4  (predict for NP_001078261.1)
other 6,  chlo 3  (predict for NP_001327179.1)
other 6,  chlo 3  (predict for NP_001327180.1)
other 6,  chlo 3  (predict for NP_190470.1)
other 6,  chlo 3  (predict for NP_850672.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
BBC1
ath-u.5
for
BBC1
ath-r.7
for
BBC1
ath-m.9
for
BBC1
ath-e.2
for
BBC1
ath-m.4.hor
for
BBC1
ath-m.4.lig
for
BBC1
ath-m.4.str
for
BBC1
ath-m.4.tis
for
BBC1
ath-u.5
for
AT5G23900
bra-r.6
for
103874976
bra-r.6
for
103873508
bra-r.6
for
103865696
bna-r.1
for
111210580
bna-r.1
for
106347447
bna-r.1
for
106365518
ghi-r.1
for
107912654
ghi-r.1
for
107915465
ghi-r.1
for
107954756
cit-r.1
for
102614464
cit-r.1
for
102613171
gma-u.5
for
100305489
gma-u.5
for
100805957
gma-u.5
for
100782333
vvi-u.5
for
100257471
vvi-u.5
for
100246745
ppo-u.5
for
18094068
ppo-u.5
for
7491903
ppo-u.5
for
7473881
mtr-u.5
for
11410980
mtr-u.5
for
25482128
mtr-u.5
for
11426640
sly-u.5
for
101264241
sly-u.5
for
101262297
sot-r.1
for
RPL13
sot-r.1
for
102591658
sot-r.1
for
102589955
nta-r.1
for
107822051
nta-r.1
for
107805709
nta-r.1
for
107802841
osa-u.5
for
4339923
osa-u.5
for
4333306
zma-u.5
for
100282254
zma-u.5
for
100273645
zma-u.5
for
100286371
tae-r.2
for
123131777
tae-r.2
for
123135654
tae-r.2
for
123165450
hvu-r.1
for
123401771
hvu-r.1
for
123407934
sbi-r.1
for
8080961
sbi-r.1
for
8064692
sbi-r.1
for
8079817
bdi-r.1
for
100830340
bdi-r.1
for
100825017
cre-r.1
for
CHLRE_14g630100v5


Ortholog ID: 1982
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi cre
Symbol BBC1 AT5G23900 LOC103874976 LOC103865696 LOC103873096 LOC106365518 LOC106366026 LOC111197723 LOC107954756 LOC121232132 LOC107937314 LOC102614464 LOC102613171 LOC100305489 LOC100805957 LOC100499935 LOC100257471 LOC100246745 LOC7491903 LOC7473881 LOC7467594 LOC11410980 LOC25482128 LOC11426640 LOC101264241 LOC101262297 RPL13 LOC102591658 LOC102589955 LOC107805709 LOC107770287 LOC107764897 LOC4339923 LOC4333306 LOC100282254 LOC100273645 LOC100286371 LOC123131777 LOC123165450 LOC123162399 LOC123401771 LOC123407934 LOC8080961 LOC8064692 LOC8079817 LOC100830340 LOC100825017 CHLRE_14g630100v5
Function* breast basic conserved 1 Ribosomal protein L13e family protein 60S ribosomal protein L13-1 60S ribosomal protein L13-3 60S ribosomal protein L13-1 60S ribosomal protein L13-2-like 60S ribosomal protein L13-3-like 60S ribosomal protein L13-2-like 60S ribosomal protein L13-1 60S ribosomal protein L13-1 60S ribosomal protein L13-1-like 60S ribosomal protein L13-1 60S ribosomal protein L13-1 60S ribosomal protein L13-1 60S ribosomal protein L13-1 60S ribosomal protein L13 large ribosomal subunit protein eL13z large ribosomal subunit protein eL13z 60S ribosomal protein L13-1 60S ribosomal protein L13-1 60S ribosomal protein L13-1 60S ribosomal protein L13-1 60S ribosomal protein L13-1 60S ribosomal protein L13-1 large ribosomal subunit protein eL13z large ribosomal subunit protein eL13z ribosomal protein L13 60S ribosomal protein L13-1-like 60S ribosomal protein L13-1-like large ribosomal subunit protein eL13z-like large ribosomal subunit protein eL13y-like 60S ribosomal protein L13-1-like 60S ribosomal protein L13-1 large ribosomal subunit protein eL13y 60S ribosomal protein L13-2 60S ribosomal protein L13 60S ribosomal protein L13 60S ribosomal protein L13-1 60S ribosomal protein L13-1 60S ribosomal protein L13-1 60S ribosomal protein L13-1-like 60S ribosomal protein L13-1-like 60S ribosomal protein L13-2 60S ribosomal protein L13-2 60S ribosomal protein L13-2 60S ribosomal protein L13-1 60S ribosomal protein L13-1 ribosomal protein L13
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 12
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 17
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 17
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 19
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 18
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 18
sbi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 18
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824062 832455 103874976 103865696 103873096 106365518 106366026 111197723 107954756 121232132 107937314 102614464 102613171 100305489 100805957 100499935 100257471 100246745 7491903 7473881 7467594 11410980 25482128 11426640 101264241 101262297 102603931 102591658 102589955 107805709 107770287 107764897 4339923 4333306 100282254 100273645 100286371 123131777 123165450 123162399 123401771 123407934 8080961 8064692 8079817 100830340 100825017 5718254
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