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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   PEL1   Eukaryotic release factor 1 (eRF1) family protein 
 ath-u.5   PEL1   Eukaryotic release factor 1 (eRF1) family protein 
 ath-r.7   PEL1   Eukaryotic release factor 1 (eRF1) family protein 
 ath-m.9   PEL1   Eukaryotic release factor 1 (eRF1) family protein 
 ath-e.2   PEL1   Eukaryotic release factor 1 (eRF1) family protein 
 ath-m.4.hor   PEL1   Eukaryotic release factor 1 (eRF1) family protein 
 ath-m.4.lig   PEL1   Eukaryotic release factor 1 (eRF1) family protein 
 ath-m.4.str   PEL1   Eukaryotic release factor 1 (eRF1) family protein 
 ath-m.4.tis   PEL1   Eukaryotic release factor 1 (eRF1) family protein 
 ath-u.5   AT3G58390   Eukaryotic release factor 1 (eRF1) family protein 
 bra-r.6   103861707   protein PELOTA 1 
 bna-r.1   106407055   protein PELOTA 1 
 bna-r.1   106440967   protein PELOTA 1 
 ghi-r.1   107909075   protein PELOTA 1 
 cit-r.1   102617256   protein PELOTA 1 
 cit-r.1   102616755   protein PELOTA 1-like 
 gma-u.5   100800939   protein PELOTA 1 
 gma-u.5   100793935   protein pelota-like 
 vvi-u.5   100256390   protein PELOTA 1 
 ppo-u.5   7464808   protein PELOTA 1 
 mtr-u.5   25484607   protein PELOTA 1 
 sly-u.5   PELOTA   protein pelota homolog 
 sot-r.1   102593007   protein PELOTA 1 
 nta-r.1   107790825   protein PELOTA 1-like 
 nta-r.1   107827364   protein PELOTA 1 
 osa-u.5   9269039   protein PELOTA 1 
 zma-u.5   103645815   protein PELOTA 1 
 tae-r.2   123190678   protein PELOTA 1 
 tae-r.2   123047004   protein PELOTA 1 
 tae-r.2   123054835   protein PELOTA 1 
 hvu-r.1   123428056   protein PELOTA 1 
 sbi-r.1   110436527   protein PELOTA 1 
 bdi-r.1   100821881   protein PELOTA 1 
 cre-r.1   CHLRE_09g388615v5   uncharacterized protein 

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Top 50 coexpressed genes to PEL1 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PEL1 (ath-m.4.bio coexpression data)

CoexMap"828876"


athPEL1 | Entrez gene ID : 828876      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO:0070966 [list] [network] nuclear-transcribed mRNA catabolic process, no-go decay  (2 genes)  IEP  
GO:0070481 [list] [network] nuclear-transcribed mRNA catabolic process, non-stop decay  (3 genes)  IEP  
GO:1902373 [list] [network] negative regulation of mRNA catabolic process  (12 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001329759.1 [sequence] [blastp]
NP_001329760.1 [sequence] [blastp]
NP_194495.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  pero 1  (predict for NP_001329759.1)
chlo 4,  mito 4,  pero 1  (predict for NP_001329760.1)
chlo 4,  mito 4,  pero 1  (predict for NP_194495.3)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for NP_001329759.1)
other 7,  mito 3  (predict for NP_001329760.1)
other 7,  mito 3  (predict for NP_194495.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
PEL1
ath-u.5
for
PEL1
ath-r.7
for
PEL1
ath-m.9
for
PEL1
ath-e.2
for
PEL1
ath-m.4.hor
for
PEL1
ath-m.4.lig
for
PEL1
ath-m.4.str
for
PEL1
ath-m.4.tis
for
PEL1
ath-u.5
for
AT3G58390
bra-r.6
for
103861707
bna-r.1
for
106407055
bna-r.1
for
106440967
ghi-r.1
for
107909075
cit-r.1
for
102617256
cit-r.1
for
102616755
gma-u.5
for
100800939
gma-u.5
for
100793935
vvi-u.5
for
100256390
ppo-u.5
for
7464808
mtr-u.5
for
25484607
sly-u.5
for
PELOTA
sot-r.1
for
102593007
nta-r.1
for
107790825
nta-r.1
for
107827364
osa-u.5
for
9269039
zma-u.5
for
103645815
tae-r.2
for
123190678
tae-r.2
for
123047004
tae-r.2
for
123054835
hvu-r.1
for
123428056
sbi-r.1
for
110436527
bdi-r.1
for
100821881
cre-r.1
for
CHLRE_09g388615v5


Ortholog ID: 8513
Species ath ath bra bna bna ghi cit cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PEL1 AT3G58390 LOC103861707 LOC106407055 LOC106440967 LOC107909075 LOC102617256 LOC102616755 LOC100800939 LOC100793935 LOC100256390 LOC7464808 LOC25484607 PELOTA LOC102593007 LOC107790825 LOC107827364 LOC9269039 LOC103645815 LOC123190678 LOC123047004 LOC123054835 LOC123428056 LOC110436527 LOC100821881 CHLRE_09g388615v5
Function* Eukaryotic release factor 1 (eRF1) family protein Eukaryotic release factor 1 (eRF1) family protein protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 protein PELOTA 1-like protein PELOTA 1 protein pelota-like protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 protein pelota homolog protein PELOTA 1 protein PELOTA 1-like protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 protein PELOTA 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
bra04144 Endocytosis 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma00541 Biosynthesis of various nucleotide sugars 2
gma01250 Biosynthesis of nucleotide sugars 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
ppo04144 Endocytosis 3
ppo04145 Phagosome 3
ppo04148 Efferocytosis 2
ppo04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
sot04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 2
zma03022 Basal transcription factors 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03015 mRNA surveillance pathway 3
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae04136 Autophagy - other 2
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828876 825008 103861707 106407055 106440967 107909075 102617256 102616755 100800939 100793935 100256390 7464808 25484607 101251671 102593007 107790825 107827364 9269039 103645815 123190678 123047004 123054835 123428056 110436527 100821881 5720592
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