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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   PAA1   P-type ATP-ase 1 
 ath-u.5   PAA1   P-type ATP-ase 1 
 ath-r.7   PAA1   P-type ATP-ase 1 
 ath-m.9   PAA1   P-type ATP-ase 1 
 ath-e.2   PAA1   P-type ATP-ase 1 
 ath-m.4.hor   PAA1   P-type ATP-ase 1 
 ath-m.4.lig   PAA1   P-type ATP-ase 1 
 ath-m.4.str   PAA1   P-type ATP-ase 1 
 ath-m.4.tis   PAA1   P-type ATP-ase 1 
 ath-u.5   PAA2   uncharacterized protein 
 bra-r.6   103846231   copper-transporting ATPase PAA1, chloroplastic 
 bra-r.6   103845593   copper-transporting ATPase PAA2, chloroplastic 
 bna-r.1   106371676   copper-transporting ATPase PAA2, chloroplastic 
 bna-r.1   106438538   copper-transporting ATPase PAA1, chloroplastic 
 bna-r.1   106421334   copper-transporting ATPase PAA2, chloroplastic 
 ghi-r.1   107887448   copper-transporting ATPase PAA1, chloroplastic 
 ghi-r.1   107962848   copper-transporting ATPase PAA2, chloroplastic 
 ghi-r.1   107908965   copper-transporting ATPase PAA1, chloroplastic 
 cit-r.1   102612705   copper-transporting ATPase PAA1, chloroplastic 
 cit-r.1   102619303   copper-transporting ATPase PAA2, chloroplastic 
 gma-u.5   100777857   copper-transporting ATPase PAA1, chloroplastic 
 gma-u.5   100796210   copper-transporting ATPase PAA1, chloroplastic 
 gma-u.5   HMA8   chloroplast copper-translocating HMA8 P-ATPase 
 vvi-u.5   100257685   copper-transporting ATPase PAA1, chloroplastic 
 vvi-u.5   100264462   copper-transporting ATPase PAA2, chloroplastic 
 ppo-u.5   7478156   copper-transporting ATPase PAA1, chloroplastic 
 ppo-u.5   18107733   copper-transporting ATPase PAA2, chloroplastic 
 ppo-u.5   7470538   copper-transporting ATPase PAA1, chloroplastic 
 mtr-u.5   25493272   copper-transporting ATPase PAA1, chloroplastic 
 mtr-u.5   11428787   copper-transporting ATPase PAA2, chloroplastic 
 sly-u.5   101267332   copper-transporting ATPase PAA2, chloroplastic 
 sly-u.5   101265776   copper-transporting ATPase PAA1, chloroplastic 
 sot-r.1   102600832   copper-transporting ATPase PAA2, chloroplastic-like 
 sot-r.1   102582410   copper-transporting ATPase PAA1, chloroplastic 
 sot-r.1   102597236   copper-transporting ATPase PAA2, chloroplastic-like 
 nta-r.1   107811884   copper-transporting ATPase PAA1, chloroplastic 
 nta-r.1   107788472   copper-transporting ATPase PAA2, chloroplastic 
 nta-r.1   107773106   copper-transporting ATPase PAA2, chloroplastic 
 osa-u.5   4345883   copper-transporting ATPase PAA1, chloroplastic 
 osa-u.5   4331814   copper-transporting ATPase PAA2, chloroplastic 
 zma-u.5   100383364   uncharacterized LOC100383364 
 zma-u.5   100381708   uncharacterized LOC100381708 
 tae-r.2   123084728   copper-transporting ATPase PAA2, chloroplastic 
 tae-r.2   123093366   copper-transporting ATPase PAA2, chloroplastic 
 tae-r.2   123162255   copper-transporting ATPase PAA1, chloroplastic 
 hvu-r.1   123449600   copper-transporting ATPase PAA2, chloroplastic 
 hvu-r.1   123406919   copper-transporting ATPase PAA1, chloroplastic 
 sbi-r.1   8059792   copper-transporting ATPase PAA2, chloroplastic 
 sbi-r.1   8067039   copper-transporting ATPase PAA1, chloroplastic 
 bdi-r.1   100823284   copper-transporting ATPase PAA1, chloroplastic 
 bdi-r.1   100831918   copper-transporting ATPase PAA2, chloroplastic 
 cre-r.1   CHLRE_10g422201v5   uncharacterized protein 
 cre-r.1   CHLRE_10g424775v5   uncharacterized protein 

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Top 50 coexpressed genes to PAA1 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAA1 (ath-m.4.bio coexpression data)

CoexMap"829490"


athPAA1 | Entrez gene ID : 829490      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 2 3 2 3 2 2 3 3 2 2 3 2 2 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04016 [list] [network] MAPK signaling pathway - plant (146 genes)
GO BP
GO:0035434 [list] [network] copper ion transmembrane transport  (7 genes)  IMP  
GO:0055070 [list] [network] copper ion homeostasis  (12 genes)  IDA  
GO:0009767 [list] [network] photosynthetic electron transport chain  (35 genes)  IMP  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA IDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0016531 [list] [network] copper chaperone activity  (7 genes)  IDA  
GO:0005375 [list] [network] copper ion transmembrane transporter activity  (15 genes)  IMP  
GO:0015662 [list] [network] P-type ion transporter activity  (42 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001328919.1 [sequence] [blastp]
NP_567924.1 [sequence] [blastp]
NP_974675.1 [sequence] [blastp]
NP_974676.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 4  (predict for NP_001328919.1)
mito 6,  chlo 4  (predict for NP_567924.1)
chlo 6,  plas 2,  mito 1,  E.R. 1,  pero 1  (predict for NP_974675.1)
chlo 6,  plas 2,  mito 1,  E.R. 1,  pero 1  (predict for NP_974676.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001328919.1)
chlo 8  (predict for NP_567924.1)
chlo 8  (predict for NP_974675.1)
chlo 8  (predict for NP_974676.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
PAA1
ath-u.5
for
PAA1
ath-r.7
for
PAA1
ath-m.9
for
PAA1
ath-e.2
for
PAA1
ath-m.4.hor
for
PAA1
ath-m.4.lig
for
PAA1
ath-m.4.str
for
PAA1
ath-m.4.tis
for
PAA1
ath-u.5
for
PAA2
bra-r.6
for
103846231
bra-r.6
for
103845593
bna-r.1
for
106371676
bna-r.1
for
106438538
bna-r.1
for
106421334
ghi-r.1
for
107887448
ghi-r.1
for
107962848
ghi-r.1
for
107908965
cit-r.1
for
102612705
cit-r.1
for
102619303
gma-u.5
for
100777857
gma-u.5
for
100796210
gma-u.5
for
HMA8
vvi-u.5
for
100257685
vvi-u.5
for
100264462
ppo-u.5
for
7478156
ppo-u.5
for
18107733
ppo-u.5
for
7470538
mtr-u.5
for
25493272
mtr-u.5
for
11428787
sly-u.5
for
101267332
sly-u.5
for
101265776
sot-r.1
for
102600832
sot-r.1
for
102582410
sot-r.1
for
102597236
nta-r.1
for
107811884
nta-r.1
for
107788472
nta-r.1
for
107773106
osa-u.5
for
4345883
osa-u.5
for
4331814
zma-u.5
for
100383364
zma-u.5
for
100381708
tae-r.2
for
123084728
tae-r.2
for
123093366
tae-r.2
for
123162255
hvu-r.1
for
123449600
hvu-r.1
for
123406919
sbi-r.1
for
8059792
sbi-r.1
for
8067039
bdi-r.1
for
100823284
bdi-r.1
for
100831918
cre-r.1
for
CHLRE_10g422201v5
cre-r.1
for
CHLRE_10g424775v5


Ortholog ID: 3034
Species ath ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre cre
Symbol PAA1 PAA2 LOC103846231 LOC103845593 LOC106371676 LOC106438538 LOC106421334 LOC107887448 LOC107908965 LOC107900981 LOC102612705 LOC102619303 LOC100777857 LOC100796210 HMA8 LOC100257685 LOC100264462 LOC7478156 LOC18107733 LOC25493272 LOC11428787 LOC101267332 LOC101265776 LOC102600832 LOC102582410 LOC102597236 LOC107811884 LOC107773106 LOC107763623 LOC4345883 LOC4331814 LOC100383364 LOC100381708 LOC123164433 LOC123150949 LOC123098640 LOC123449600 LOC123406919 LOC8059792 LOC8067039 LOC100823284 LOC100831918 CHLRE_10g422201v5 CHLRE_10g424775v5
Function* P-type ATP-ase 1 uncharacterized protein copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA1, chloroplastic chloroplast copper-translocating HMA8 P-ATPase copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic-like copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic-like copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic uncharacterized LOC100383364 uncharacterized LOC100381708 copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA1, chloroplastic copper-transporting ATPase PAA2, chloroplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
ath00480 Glutathione metabolism 2
ath04016 MAPK signaling pathway - plant 2
ath00240 Pyrimidine metabolism 2
ath01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 3
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00260 Glycine, serine and threonine metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna03060 Protein export 2
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 10
bna01240 Biosynthesis of cofactors 10
bna04016 MAPK signaling pathway - plant 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna03060 Protein export 2
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 4
ghi00561 Glycerolipid metabolism 2
ghi03060 Protein export 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00261 Monobactam biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 4
ghi00561 Glycerolipid metabolism 2
ghi03060 Protein export 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00261 Monobactam biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00280 Valine, leucine and isoleucine degradation 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit04016 MAPK signaling pathway - plant 2
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma00591 Linoleic acid metabolism 2
gma00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 6
gma04146 Peroxisome 5
gma00350 Tyrosine metabolism 2
gma00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi04146 Peroxisome 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03060 Protein export 2
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00020 Citrate cycle (TCA cycle) 2
sly00620 Pyruvate metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
sly01200 Carbon metabolism 2
sly01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot01240 Biosynthesis of cofactors 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot01240 Biosynthesis of cofactors 5
sot00010 Glycolysis / Gluconeogenesis 4
sot01230 Biosynthesis of amino acids 4
sot00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 5
sot00920 Sulfur metabolism 5
sot01320 Sulfur cycle 4
sot04016 MAPK signaling pathway - plant 2
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 3
nta04016 MAPK signaling pathway - plant 2
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 3
nta04016 MAPK signaling pathway - plant 2
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 4
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 4
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 3
tae03082 ATP-dependent chromatin remodeling 3
tae03040 Spliceosome 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 3
tae03082 ATP-dependent chromatin remodeling 3
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae04016 MAPK signaling pathway - plant 3
tae00450 Selenocompound metabolism 3
tae00030 Pentose phosphate pathway 3
tae00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00620 Pyruvate metabolism 3
sbi00710 Carbon fixation by Calvin cycle 3
sbi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi01200 Carbon metabolism 4
bdi00710 Carbon fixation by Calvin cycle 3
bdi00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829490 832253 103846231 103845593 106371676 106438538 106421334 107887448 107908965 107900981 102612705 102619303 100777857 100796210 100127402 100257685 100264462 7478156 18107733 25493272 11428787 101267332 101265776 102600832 102582410 102597236 107811884 107773106 107763623 4345883 4331814 100383364 100381708 123164433 123150949 123098640 123449600 123406919 8059792 8067039 100823284 100831918 5728250 5728203
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