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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   AT1G11860   Glycine cleavage T-protein family 
 ath-u.5   AT1G11860   Glycine cleavage T-protein family 
 ath-r.7   AT1G11860   Glycine cleavage T-protein family 
 ath-m.9   AT1G11860   Glycine cleavage T-protein family 
 ath-e.2   AT1G11860   Glycine cleavage T-protein family 
 ath-m.4.hor   AT1G11860   Glycine cleavage T-protein family 
 ath-m.4.lig   AT1G11860   Glycine cleavage T-protein family 
 ath-m.4.str   AT1G11860   Glycine cleavage T-protein family 
 ath-m.4.tis   AT1G11860   Glycine cleavage T-protein family 
 bra-r.6   103843220   aminomethyltransferase, mitochondrial 
 bra-r.6   103836204   aminomethyltransferase, mitochondrial 
 bna-r.1   106415143   aminomethyltransferase, mitochondrial 
 bna-r.1   106362172   aminomethyltransferase, mitochondrial 
 bna-r.1   106435836   aminomethyltransferase, mitochondrial-like 
 ghi-r.1   107900587   aminomethyltransferase, mitochondrial 
 ghi-r.1   107962001   aminomethyltransferase, mitochondrial 
 ghi-r.1   107958283   aminomethyltransferase, mitochondrial 
 cit-r.1   102624724   aminomethyltransferase, mitochondrial 
 gma-u.5   100809241   aminomethyltransferase, mitochondrial 
 gma-u.5   100804288   aminomethyltransferase, mitochondrial 
 gma-u.5   100800509   aminomethyltransferase, mitochondrial 
 vvi-u.5   100250401   aminomethyltransferase, mitochondrial 
 ppo-u.5   18111215   aminomethyltransferase, mitochondrial 
 ppo-u.5   18097363   aminomethyltransferase, mitochondrial 
 mtr-u.5   11437303   aminomethyltransferase, mitochondrial 
 sly-u.5   101249137   aminomethyltransferase, mitochondrial 
 sot-r.1   102602939   aminomethyltransferase, mitochondrial-like 
 nta-r.1   107805971   aminomethyltransferase, mitochondrial 
 nta-r.1   107783755   aminomethyltransferase, mitochondrial 
 osa-u.5   4337051   aminomethyltransferase, mitochondrial 
 zma-u.5   100279332   uncharacterized LOC100279332 
 tae-r.2   123190483   aminomethyltransferase, mitochondrial 
 tae-r.2   123054633   aminomethyltransferase, mitochondrial 
 tae-r.2   123046778   aminomethyltransferase, mitochondrial 
 hvu-r.1   123427785   aminomethyltransferase, mitochondrial 
 sbi-r.1   8066805   aminomethyltransferase, mitochondrial 
 bdi-r.1   100824957   aminomethyltransferase, mitochondrial 
 cre-r.1   CHLRE_03g193750v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G11860 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G11860 (ath-m.4.bio coexpression data)

CoexMap"837733"


athAT1G11860 | Entrez gene ID : 837733      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 3 1 2 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (81 genes)
ath00670 [list] [network] One carbon pool by folate (42 genes)
ath00785 [list] [network] Lipoic acid metabolism (36 genes)
ath01200 [list] [network] Carbon metabolism (275 genes)
GO BP
GO:0006546 [list] [network] glycine catabolic process  (5 genes)  IEA  
GO CC
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0048046 [list] [network] apoplast  (340 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA IDA ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO MF
GO:0004047 [list] [network] aminomethyltransferase activity  (1 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001318983.1 [sequence] [blastp]
NP_172650.1 [sequence] [blastp]
NP_849646.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 2  (predict for NP_001318983.1)
chlo 4,  mito 4,  chlo_mito 4  (predict for NP_172650.1)
chlo 4,  mito 4,  chlo_mito 4  (predict for NP_849646.1)
Subcellular
localization
TargetP
mito 9  (predict for NP_001318983.1)
mito 8  (predict for NP_172650.1)
mito 8  (predict for NP_849646.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
AT1G11860
ath-u.5
for
AT1G11860
ath-r.7
for
AT1G11860
ath-m.9
for
AT1G11860
ath-e.2
for
AT1G11860
ath-m.4.hor
for
AT1G11860
ath-m.4.lig
for
AT1G11860
ath-m.4.str
for
AT1G11860
ath-m.4.tis
for
AT1G11860
bra-r.6
for
103843220
bra-r.6
for
103836204
bna-r.1
for
106415143
bna-r.1
for
106362172
bna-r.1
for
106435836
ghi-r.1
for
107900587
ghi-r.1
for
107962001
ghi-r.1
for
107958283
cit-r.1
for
102624724
gma-u.5
for
100809241
gma-u.5
for
100804288
gma-u.5
for
100800509
vvi-u.5
for
100250401
ppo-u.5
for
18111215
ppo-u.5
for
18097363
mtr-u.5
for
11437303
sly-u.5
for
101249137
sot-r.1
for
102602939
nta-r.1
for
107805971
nta-r.1
for
107783755
osa-u.5
for
4337051
zma-u.5
for
100279332
tae-r.2
for
123190483
tae-r.2
for
123054633
tae-r.2
for
123046778
hvu-r.1
for
123427785
sbi-r.1
for
8066805
bdi-r.1
for
100824957
cre-r.1
for
CHLRE_03g193750v5


Ortholog ID: 6697
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT1G11860 LOC103843220 LOC103836204 LOC106415143 LOC106362172 LOC106413869 LOC107962001 LOC107958283 LOC107905916 LOC102624724 LOC100809241 LOC100804288 LOC100778188 LOC100250401 LOC18111215 LOC18097363 LOC11437303 LOC101249137 LOC102602939 LOC107805971 LOC107783755 LOC4337051 LOC100279332 LOC123190483 LOC123054633 LOC123046778 LOC123427785 LOC8066805 LOC100824957 CHLRE_03g193750v5
Function* Glycine cleavage T-protein family aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial-like aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial uncharacterized LOC100279332 aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 10
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath00260 Glycine, serine and threonine metabolism 5
ath00670 One carbon pool by folate 5
ath00710 Carbon fixation by Calvin cycle 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 8
bra01230 Biosynthesis of amino acids 6
bra00630 Glyoxylate and dicarboxylate metabolism 5
bra00785 Lipoic acid metabolism 4
bra00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 9
bra01230 Biosynthesis of amino acids 7
bra00630 Glyoxylate and dicarboxylate metabolism 6
bra00010 Glycolysis / Gluconeogenesis 5
bra00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00670 One carbon pool by folate 4
bna00785 Lipoic acid metabolism 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00670 One carbon pool by folate 4
bna00785 Lipoic acid metabolism 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00670 One carbon pool by folate 4
bna00785 Lipoic acid metabolism 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 6
ghi00260 Glycine, serine and threonine metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 4
cit01230 Biosynthesis of amino acids 3
cit03010 Ribosome 3
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00260 Glycine, serine and threonine metabolism 3
gma00630 Glyoxylate and dicarboxylate metabolism 3
gma00670 One carbon pool by folate 3
gma00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 4
gma00630 Glyoxylate and dicarboxylate metabolism 4
gma00670 One carbon pool by folate 4
gma00785 Lipoic acid metabolism 4
gma01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 3
gma00910 Nitrogen metabolism 2
gma00260 Glycine, serine and threonine metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi00710 Carbon fixation by Calvin cycle 4
vvi00195 Photosynthesis 3
vvi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 10
ppo00710 Carbon fixation by Calvin cycle 8
ppo01230 Biosynthesis of amino acids 7
ppo00030 Pentose phosphate pathway 4
ppo00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00670 One carbon pool by folate 10
ppo01230 Biosynthesis of amino acids 8
ppo00270 Cysteine and methionine metabolism 7
ppo01200 Carbon metabolism 6
ppo01240 Biosynthesis of cofactors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00630 Glyoxylate and dicarboxylate metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr01230 Biosynthesis of amino acids 3
mtr00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00630 Glyoxylate and dicarboxylate metabolism 7
sly01200 Carbon metabolism 7
sly00260 Glycine, serine and threonine metabolism 3
sly00710 Carbon fixation by Calvin cycle 3
sly01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 9
sot00710 Carbon fixation by Calvin cycle 8
sot01230 Biosynthesis of amino acids 7
sot00010 Glycolysis / Gluconeogenesis 3
sot00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 10
nta00260 Glycine, serine and threonine metabolism 8
nta00710 Carbon fixation by Calvin cycle 6
nta00220 Arginine biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 10
nta00260 Glycine, serine and threonine metabolism 8
nta00710 Carbon fixation by Calvin cycle 6
nta00220 Arginine biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00630 Glyoxylate and dicarboxylate metabolism 6
osa01230 Biosynthesis of amino acids 5
osa00260 Glycine, serine and threonine metabolism 5
osa00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 7
zma01200 Carbon metabolism 7
zma00630 Glyoxylate and dicarboxylate metabolism 5
zma00710 Carbon fixation by Calvin cycle 4
zma00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 5
tae00260 Glycine, serine and threonine metabolism 4
tae00670 One carbon pool by folate 4
tae00785 Lipoic acid metabolism 4
tae01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 7
tae00260 Glycine, serine and threonine metabolism 4
tae00670 One carbon pool by folate 4
tae00785 Lipoic acid metabolism 4
tae01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 4
tae00260 Glycine, serine and threonine metabolism 3
tae00670 One carbon pool by folate 3
tae00785 Lipoic acid metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 10
hvu00710 Carbon fixation by Calvin cycle 6
hvu00630 Glyoxylate and dicarboxylate metabolism 6
hvu00195 Photosynthesis 3
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 6
sbi01230 Biosynthesis of amino acids 5
sbi00030 Pentose phosphate pathway 4
sbi00710 Carbon fixation by Calvin cycle 3
sbi00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi00195 Photosynthesis 4
bdi00710 Carbon fixation by Calvin cycle 3
bdi00190 Oxidative phosphorylation 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 5
cre00630 Glyoxylate and dicarboxylate metabolism 5
cre01200 Carbon metabolism 5
cre00670 One carbon pool by folate 3
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837733 103843220 103836204 106415143 106362172 106413869 107962001 107958283 107905916 102624724 100809241 100804288 100778188 100250401 18111215 18097363 11437303 101249137 102602939 107805971 107783755 4337051 100279332 123190483 123054633 123046778 123427785 8066805 100824957 5718707
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