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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   AT1G15420   WD repeat protein 
 ath-u.5   AT1G15420   WD repeat protein 
 ath-r.7   AT1G15420   WD repeat protein 
 ath-m.9   AT1G15420   WD repeat protein 
 ath-e.2   AT1G15420   WD repeat protein 
 ath-m.4.hor   AT1G15420   WD repeat protein 
 ath-m.4.lig   AT1G15420   WD repeat protein 
 ath-m.4.str   AT1G15420   WD repeat protein 
 ath-m.4.tis   AT1G15420   WD repeat protein 
 bra-r.6   103842906   uncharacterized protein F23B12.7 
 bra-r.6   103872336   WD repeat-containing protein 43 
 bna-r.1   106402822   WD repeat-containing protein 43 
 bna-r.1   106382300   WD repeat-containing protein 43-like 
 ghi-r.1   107906478   WD repeat-containing protein 43 
 ghi-r.1   107944969   WD repeat-containing protein 43 
 cit-r.1   102614663   uncharacterized LOC102614663 
 gma-u.5   102664781   uncharacterized LOC102664781 
 gma-u.5   100820265   WD repeat-containing protein 43 
 vvi-u.5   100265278   uncharacterized LOC100265278 
 ppo-u.5   18094734   uncharacterized LOC18094734 
 ppo-u.5   7475717   polyubiquitin 11 
 mtr-u.5   25491339   WD repeat-containing protein 43 
 sly-u.5   101255780   uncharacterized LOC101255780 
 sot-r.1   102591528   WD repeat-containing protein 43 
 nta-r.1   107782652   uncharacterized LOC107782652 
 nta-r.1   107793214   uncharacterized LOC107793214 
 osa-u.5   4326248   uncharacterized LOC4326248 
 osa-u.5   4352882   U3 small nucleolar RNA-associated protein 5 
 zma-u.5   100193178   uncharacterized LOC100193178 
 tae-r.2   123101982   WD repeat-containing protein 43 
 tae-r.2   123061606   uncharacterized LOC123061606 
 tae-r.2   123078674   uncharacterized LOC123078674 
 hvu-r.1   123443980   uncharacterized WD repeat-containing protein alr2800-like 
 hvu-r.1   123395145   WD repeat-containing protein 43-like 
 sbi-r.1   8069011   uncharacterized LOC8069011 
 bdi-r.1   100837506   U3 small nucleolar RNA-associated protein 5 

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Top 50 coexpressed genes to AT1G15420 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G15420 (ath-m.4.bio coexpression data)

CoexMap"838113"


athAT1G15420 | Entrez gene ID : 838113      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 2 2 1 2 1 2 1 1 1 2 2 1 3 2 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO:0006364 [list] [network] rRNA processing  (183 genes)  IPI  
GO CC
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001322225.1 [sequence] [blastp]
NP_849671.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  nucl_plas 4,  chlo 1,  cyto 1,  mito 1,  cysk 1,  chlo_mito 1  (predict for NP_001322225.1)
nucl 4,  nucl_plas 4,  chlo 1,  mito 1,  plas 1,  chlo_mito 1  (predict for NP_849671.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001322225.1)
other 8  (predict for NP_849671.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
AT1G15420
ath-u.5
for
AT1G15420
ath-r.7
for
AT1G15420
ath-m.9
for
AT1G15420
ath-e.2
for
AT1G15420
ath-m.4.hor
for
AT1G15420
ath-m.4.lig
for
AT1G15420
ath-m.4.str
for
AT1G15420
ath-m.4.tis
for
AT1G15420
bra-r.6
for
103842906
bra-r.6
for
103872336
bna-r.1
for
106402822
bna-r.1
for
106382300
ghi-r.1
for
107906478
ghi-r.1
for
107944969
cit-r.1
for
102614663
gma-u.5
for
102664781
gma-u.5
for
100820265
vvi-u.5
for
100265278
ppo-u.5
for
18094734
ppo-u.5
for
7475717
mtr-u.5
for
25491339
sly-u.5
for
101255780
sot-r.1
for
102591528
nta-r.1
for
107782652
nta-r.1
for
107793214
osa-u.5
for
4326248
osa-u.5
for
4352882
zma-u.5
for
100193178
tae-r.2
for
123101982
tae-r.2
for
123061606
tae-r.2
for
123078674
hvu-r.1
for
123443980
hvu-r.1
for
123395145
sbi-r.1
for
8069011
bdi-r.1
for
100837506


Ortholog ID: 5008
Species ath bra bra bna bna ghi ghi cit gma gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma tae tae tae hvu hvu sbi bdi
Symbol AT1G15420 LOC103842906 LOC103872336 LOC106402822 LOC106452308 LOC107906478 LOC107944969 LOC102614663 LOC102664781 LOC100820265 LOC100799236 LOC100265278 LOC18094734 LOC7475717 LOC25491339 LOC101255780 LOC102591528 LOC107782652 LOC107793214 LOC4326248 LOC4352882 LOC100193178 LOC123101982 LOC123078674 LOC123070230 LOC123443980 LOC123395145 LOC8069011 LOC100837506
Function* WD repeat protein uncharacterized protein F23B12.7 WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43 uncharacterized LOC102614663 uncharacterized LOC102664781 WD repeat-containing protein 43 WD repeat-containing protein 43 uncharacterized LOC100265278 uncharacterized LOC18094734 polyubiquitin 11 WD repeat-containing protein 43 uncharacterized LOC101255780 WD repeat-containing protein 43 uncharacterized LOC107782652 uncharacterized LOC107793214 uncharacterized LOC4326248 U3 small nucleolar RNA-associated protein 5 uncharacterized LOC100193178 WD repeat-containing protein 43 uncharacterized LOC123078674 uncharacterized LOC123070230 uncharacterized WD repeat-containing protein alr2800-like WD repeat-containing protein 43-like uncharacterized LOC8069011 U3 small nucleolar RNA-associated protein 5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna00100 Steroid biosynthesis 2
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03015 mRNA surveillance pathway 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04141 Protein processing in endoplasmic reticulum 3
tae00900 Terpenoid backbone biosynthesis 3
tae00240 Pyrimidine metabolism 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00562 Inositol phosphate metabolism 2
tae00920 Sulfur metabolism 2
tae04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03013 Nucleocytoplasmic transport 2
hvu03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838113 103842906 103872336 106402822 106452308 107906478 107944969 102614663 102664781 100820265 100799236 100265278 18094734 7475717 25491339 101255780 102591528 107782652 107793214 4326248 4352882 100193178 123101982 123078674 123070230 123443980 123395145 8069011 100837506
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