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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7475717   polyubiquitin 11 
 ppo-r.4   7475717   polyubiquitin 11 
 ppo-u.5   18094734   uncharacterized LOC18094734 
 gma-u.5   100820265   WD repeat-containing protein 43 
 gma-u.5   100799236   WD repeat-containing protein 43 
 gma-u.5   100796828   WD repeat-containing protein 43 
 mtr-u.5   25491339   WD repeat-containing protein 43 
 ath-u.5   AT1G15420   WD repeat protein 
 vvi-u.5   100265278   uncharacterized LOC100265278 
 sly-u.5   101255780   uncharacterized LOC101255780 
 osa-u.5   4352882   U3 small nucleolar RNA-associated protein 5 
 osa-u.5   4326248   uncharacterized LOC4326248 
 zma-u.5   100193178   uncharacterized LOC100193178 

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Top 50 coexpressed genes to 7475717 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7475717 (ppo-u.5 coexpression data)

CoexMap"7475717"


ppoLOC7475717 | Entrez gene ID : 7475717    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 3 3 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024452597.1 [sequence] [blastp]
XP_024452598.1 [sequence] [blastp]
XP_024452599.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_024452597.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_024452598.1)
cyto_nucl 4,  nucl 3,  cyto 3,  chlo 2,  pero 1,  cysk 1  (predict for XP_024452599.1)
Subcellular
localization
TargetP
other 8  (predict for XP_024452597.1)
other 8  (predict for XP_024452598.1)
other 8  (predict for XP_024452599.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7475717

.
ppo-r.4
for
7475717

.
ppo-u.5
for
18094734

.
gma-u.5
for
100820265

.
gma-u.5
for
100799236

.
gma-u.5
for
100796828

.
mtr-u.5
for
25491339

.
ath-u.5
for
AT1G15420

.
vvi-u.5
for
100265278

.
sly-u.5
for
101255780

.
osa-u.5
for
4352882

.
osa-u.5
for
4326248

.
zma-u.5
for
100193178

.


Ortholog ID: 5008
Species ath gma gma sly osa osa zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna sbi sot cit bdi nta nta
Symbol AT1G15420 LOC100799236 LOC100820265 LOC101255780 LOC4326248 LOC4352882 LOC100193178 LOC103872336 LOC100265278 LOC7475717 LOC18094734 LOC25491339 LOC123078674 LOC123070230 LOC123443980 LOC123395145 LOC107944969 LOC107906478 LOC106402822 LOC8069011 LOC102591528 LOC102614663 LOC100837506 LOC107793214 LOC107782652
Function* WD repeat protein WD repeat-containing protein 43 WD repeat-containing protein 43 uncharacterized LOC101255780 uncharacterized LOC4326248 U3 small nucleolar RNA-associated protein 5 uncharacterized LOC100193178 WD repeat-containing protein 43 uncharacterized LOC100265278 polyubiquitin 11 uncharacterized LOC18094734 WD repeat-containing protein 43 uncharacterized LOC123078674 uncharacterized LOC123070230 uncharacterized WD repeat-containing protein alr2800-like WD repeat-containing protein 43-like WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43 uncharacterized LOC8069011 WD repeat-containing protein 43 uncharacterized LOC102614663 U3 small nucleolar RNA-associated protein 5 uncharacterized LOC107793214 uncharacterized LOC107782652
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03015 mRNA surveillance pathway 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04141 Protein processing in endoplasmic reticulum 3
tae00900 Terpenoid backbone biosynthesis 3
tae00240 Pyrimidine metabolism 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00562 Inositol phosphate metabolism 2
tae00920 Sulfur metabolism 2
tae04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03013 Nucleocytoplasmic transport 2
hvu03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna00100 Steroid biosynthesis 2
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838113 100799236 100820265 101255780 4326248 4352882 100193178 103872336 100265278 7475717 18094734 25491339 123078674 123070230 123443980 123395145 107944969 107906478 106402822 8069011 102591528 102614663 100837506 107793214 107782652
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