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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   EMB1144   chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 
 ath-u.5   EMB1144   chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 
 ath-r.7   EMB1144   chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 
 ath-m.9   EMB1144   chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 
 ath-e.2   EMB1144   chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 
 ath-m.4.hor   EMB1144   chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 
 ath-m.4.lig   EMB1144   chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 
 ath-m.4.str   EMB1144   chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 
 ath-m.4.tis   EMB1144   chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 
 bra-r.6   103868667   chorismate synthase, chloroplastic 
 bra-r.6   103832977   chorismate synthase, chloroplastic 
 bna-r.1   111215631   chorismate synthase, chloroplastic-like 
 bna-r.1   125608941   chorismate synthase, chloroplastic-like 
 bna-r.1   106431065   chorismate synthase, chloroplastic 
 ghi-r.1   121222541   chorismate synthase, chloroplastic 
 ghi-r.1   121207734   chorismate synthase, chloroplastic 
 ghi-r.1   121207733   chorismate synthase, chloroplastic 
 cit-r.1   102627582   chorismate synthase, chloroplastic 
 gma-u.5   732570   chorismate synthase 
 gma-u.5   100814518   chorismate synthase, chloroplastic 
 vvi-u.5   100241015   chorismate synthase 1, chloroplastic 
 ppo-u.5   7457872   chorismate synthase, chloroplastic 
 ppo-u.5   7468413   chorismate synthase, chloroplastic 
 mtr-u.5   11417820   chorismate synthase 1, chloroplastic 
 sly-u.5   CS2   chorismate synthase 2 
 sly-u.5   CS1   chorismate synthase 1 
 sot-r.1   102580455   chorismate synthase 2, chloroplastic 
 sot-r.1   102589491   chorismate synthase 1, chloroplastic 
 nta-r.1   107769690   chorismate synthase 1, chloroplastic 
 nta-r.1   107790266   chorismate synthase 1, chloroplastic-like 
 osa-u.5   4332286   chorismate synthase 2, chloroplastic 
 zma-u.5   100282199   chorismate synthase 2 
 zma-u.5   100272984   Chorismate synthase chloroplastic 
 tae-r.2   123085316   chorismate synthase 2, chloroplastic 
 tae-r.2   123092727   chorismate synthase 2, chloroplastic 
 tae-r.2   123098022   chorismate synthase 2, chloroplastic 
 hvu-r.1   123449125   chorismate synthase 2, chloroplastic 
 sbi-r.1   8054323   chorismate synthase 2, chloroplastic 
 bdi-r.1   100832184   chorismate synthase 2, chloroplastic 
 cre-r.1   CHLRE_03g145747v5   uncharacterized protein 

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Top 50 coexpressed genes to EMB1144 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB1144 (ath-m.4.bio coexpression data)

CoexMap"841307"


athEMB1144 | Entrez gene ID : 841307      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 1 2 2 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (56 genes)
ath01230 [list] [network] Biosynthesis of amino acids (242 genes)
GO BP
GO:0009073 [list] [network] aromatic amino acid family biosynthetic process  (50 genes)  TAS  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
Protein NP_001031157.1 [sequence] [blastp]
NP_001031158.1 [sequence] [blastp]
NP_564534.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_001031157.1)
chlo 10  (predict for NP_001031158.1)
chlo 9,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_564534.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001031157.1)
chlo 8  (predict for NP_001031158.1)
chlo 8  (predict for NP_564534.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
EMB1144
ath-u.5
for
EMB1144
ath-r.7
for
EMB1144
ath-m.9
for
EMB1144
ath-e.2
for
EMB1144
ath-m.4.hor
for
EMB1144
ath-m.4.lig
for
EMB1144
ath-m.4.str
for
EMB1144
ath-m.4.tis
for
EMB1144
bra-r.6
for
103868667
bra-r.6
for
103832977
bna-r.1
for
111215631
bna-r.1
for
125608941
bna-r.1
for
106431065
ghi-r.1
for
121222541
ghi-r.1
for
121207734
ghi-r.1
for
121207733
cit-r.1
for
102627582
gma-u.5
for
732570
gma-u.5
for
100814518
vvi-u.5
for
100241015
ppo-u.5
for
7457872
ppo-u.5
for
7468413
mtr-u.5
for
11417820
sly-u.5
for
CS2
sly-u.5
for
CS1
sot-r.1
for
102580455
sot-r.1
for
102589491
nta-r.1
for
107769690
nta-r.1
for
107790266
osa-u.5
for
4332286
zma-u.5
for
100282199
zma-u.5
for
100272984
tae-r.2
for
123085316
tae-r.2
for
123092727
tae-r.2
for
123098022
hvu-r.1
for
123449125
sbi-r.1
for
8054323
bdi-r.1
for
100832184
cre-r.1
for
CHLRE_03g145747v5


Ortholog ID: 5631
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol EMB1144 LOC103868667 LOC103832977 LOC111215631 LOC106431065 LOC106360510 LOC121222541 LOC107957386 LOC107904083 LOC102627582 LOC732570 LOC100814518 LOC100241015 LOC7457872 LOC7468413 LOC11417820 CS2 CS1 LOC102580455 LOC102589491 LOC107769690 LOC107790266 LOC4332286 LOC100282199 LOC100272984 LOC123085316 LOC123092727 LOC123098022 LOC123449125 LOC8054323 LOC100832184 CHLRE_03g145747v5
Function* chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase chorismate synthase, chloroplastic chorismate synthase, chloroplastic chorismate synthase, chloroplastic-like chorismate synthase, chloroplastic chorismate synthase, chloroplastic chorismate synthase, chloroplastic chorismate synthase, chloroplastic chorismate synthase, chloroplastic chorismate synthase, chloroplastic chorismate synthase chorismate synthase, chloroplastic chorismate synthase 1, chloroplastic chorismate synthase, chloroplastic chorismate synthase, chloroplastic chorismate synthase 1, chloroplastic chorismate synthase 2 chorismate synthase 1 chorismate synthase 2, chloroplastic chorismate synthase 1, chloroplastic chorismate synthase 1, chloroplastic chorismate synthase 1, chloroplastic-like chorismate synthase 2, chloroplastic chorismate synthase 2 Chorismate synthase chloroplastic chorismate synthase 2, chloroplastic chorismate synthase 2, chloroplastic chorismate synthase 2, chloroplastic chorismate synthase 2, chloroplastic chorismate synthase 2, chloroplastic chorismate synthase 2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ath00030 Pentose phosphate pathway 4
ath01200 Carbon metabolism 4
ath00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 14
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bra00999 Biosynthesis of various plant secondary metabolites 4
bra01240 Biosynthesis of cofactors 3
bra00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 12
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bra00999 Biosynthesis of various plant secondary metabolites 2
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bna01230 Biosynthesis of amino acids 9
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bna01230 Biosynthesis of amino acids 11
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bna01230 Biosynthesis of amino acids 9
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 8
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
ghi00030 Pentose phosphate pathway 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 11
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
ghi00350 Tyrosine metabolism 3
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 8
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
ghi00030 Pentose phosphate pathway 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 5
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cit01230 Biosynthesis of amino acids 4
cit00020 Citrate cycle (TCA cycle) 3
cit00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 12
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
gma00010 Glycolysis / Gluconeogenesis 3
gma00350 Tyrosine metabolism 3
gma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 9
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
gma00350 Tyrosine metabolism 4
gma00360 Phenylalanine metabolism 3
gma00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
vvi01230 Biosynthesis of amino acids 8
vvi00280 Valine, leucine and isoleucine degradation 2
vvi00350 Tyrosine metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 8
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ppo00071 Fatty acid degradation 2
ppo00350 Tyrosine metabolism 2
ppo00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 9
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ppo00071 Fatty acid degradation 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
mtr01230 Biosynthesis of amino acids 4
mtr00020 Citrate cycle (TCA cycle) 3
mtr00900 Terpenoid backbone biosynthesis 2
mtr00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01230 Biosynthesis of amino acids 8
sly01200 Carbon metabolism 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 10
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sot00999 Biosynthesis of various plant secondary metabolites 2
sot00230 Purine metabolism 2
sot00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 10
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
nta01230 Biosynthesis of amino acids 8
nta00270 Cysteine and methionine metabolism 4
nta00480 Glutathione metabolism 2
nta00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 10
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
osa01200 Carbon metabolism 2
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 11
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
zma01200 Carbon metabolism 6
zma00999 Biosynthesis of various plant secondary metabolites 2
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma02010 ABC transporters 3
zma00073 Cutin, suberine and wax biosynthesis 2
zma04146 Peroxisome 2
zma00062 Fatty acid elongation 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 13
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00910 Nitrogen metabolism 3
tae00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 12
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
tae00061 Fatty acid biosynthesis 3
tae00071 Fatty acid degradation 3
tae01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 15
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 13
tae00220 Arginine biosynthesis 2
tae01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 10
hvu00270 Cysteine and methionine metabolism 6
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
hvu00670 One carbon pool by folate 4
hvu01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 11
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sbi01200 Carbon metabolism 3
sbi00350 Tyrosine metabolism 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 11
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
bdi01200 Carbon metabolism 5
bdi00541 Biosynthesis of various nucleotide sugars 2
bdi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 3
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841307 103868667 103832977 111215631 106431065 106360510 121222541 107957386 107904083 102627582 732570 100814518 100241015 7457872 7468413 11417820 544151 544154 102580455 102589491 107769690 107790266 4332286 100282199 100272984 123085316 123092727 123098022 123449125 8054323 100832184 5721248
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