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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-r.5   100249083   putative pentatricopeptide repeat-containing protein At3g15930 
 vvi-u.5   100249083   putative pentatricopeptide repeat-containing protein At3g15930 
 vvi-u.5   100258733   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 bra-r.6   103840397   putative pentatricopeptide repeat-containing protein At3g15930 
 bna-r.1   106377392   putative pentatricopeptide repeat-containing protein At3g15930 
 cit-r.1   102615537   putative pentatricopeptide repeat-containing protein At3g15930 
 sot-r.1   102590265   putative pentatricopeptide repeat-containing protein At3g15930 
 nta-r.1   107826010   putative pentatricopeptide repeat-containing protein At3g15930 
 osa-u.5   4326221   pentatricopeptide repeat-containing protein At3g62890 
 zma-u.5   103634872   putative pentatricopeptide repeat-containing protein At3g15930 
 tae-r.2   123069051   putative pentatricopeptide repeat-containing protein At3g15930 
 hvu-r.1   123443015   pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like 
 sbi-r.1   8056537   pentatricopeptide repeat-containing protein At3g62890 
 bdi-r.1   100845066   putative pentatricopeptide repeat-containing protein At3g15930 
 bdi-r.1   100846287   putative pentatricopeptide repeat-containing protein At3g15930 

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Top 50 coexpressed genes to 100249083 (vvi-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100249083 (vvi-r.5 coexpression data)

CoexMap"100249083"


vviLOC100249083 | Entrez gene ID : 100249083      
Species vvi bra bna cit sot nta osa zma tae hvu sbi bdi cre ppo ath mtr gma sly ghi
Paralog 3 1 1 1 1 1 1 1 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (811 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_002264123.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  extr 2,  nucl 1,  cyto 1,  E.R. 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for XP_002264123.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002264123.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-r.5
for
100249083
vvi-u.5
for
100249083
vvi-u.5
for
100258733
bra-r.6
for
103840397
bna-r.1
for
106377392
cit-r.1
for
102615537
sot-r.1
for
102590265
nta-r.1
for
107826010
osa-u.5
for
4326221
zma-u.5
for
103634872
tae-r.2
for
123069051
hvu-r.1
for
123443015
sbi-r.1
for
8056537
bdi-r.1
for
100845066
bdi-r.1
for
100846287


Ortholog ID: 9481
Species vvi vvi bra bna cit sot nta osa zma tae hvu sbi bdi bdi
Symbol LOC100249083 LOC100258733 LOC103840397 LOC106377392 LOC102615537 LOC102590265 LOC107826010 LOC4326221 LOC103634872 LOC123069051 LOC123443015 LOC8056537 LOC100845066 LOC100846287
Function* putative pentatricopeptide repeat-containing protein At3g15930 pentatricopeptide repeat-containing protein At1g08070, chloroplastic putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930 pentatricopeptide repeat-containing protein At3g62890 putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like pentatricopeptide repeat-containing protein At3g62890 putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00240 Pyrimidine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00480 Glutathione metabolism 4
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00480 Glutathione metabolism 2
bdi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100249083 100258733 103840397 106377392 102615537 102590265 107826010 4326221 103634872 123069051 123443015 8056537 100845066 100846287
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