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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100249083   putative pentatricopeptide repeat-containing protein At3g15930 
 vvi-r.5   100249083   putative pentatricopeptide repeat-containing protein At3g15930 
 vvi-u.5   100258733   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 osa-u.5   4326221   pentatricopeptide repeat-containing protein At3g62890 
 zma-u.5   103634872   putative pentatricopeptide repeat-containing protein At3g15930 

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Top 50 coexpressed genes to 100249083 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100249083 (vvi-u.5 coexpression data)

CoexMap"100249083"


vviLOC100249083 | Entrez gene ID : 100249083      
Species vvi osa zma sly bna ghi gma sbi nta mtr cre bra cit ppo hvu bdi sot tae ath
Paralog 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (811 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_002264123.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  extr 2,  nucl 1,  cyto 1,  E.R. 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for XP_002264123.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002264123.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100249083

.
vvi-r.5
for
100249083

.
vvi-u.5
for
100258733

.
osa-u.5
for
4326221

.
zma-u.5
for
103634872

.


Ortholog ID: 9481
Species osa zma bra vvi vvi tae hvu bna sbi sot cit bdi bdi nta
Symbol LOC4326221 LOC103634872 LOC103840397 LOC100258733 LOC100249083 LOC123069051 LOC123443015 LOC106377392 LOC8056537 LOC102590265 LOC102615537 LOC100845066 LOC100846287 LOC107826010
Function* pentatricopeptide repeat-containing protein At3g62890 putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930 pentatricopeptide repeat-containing protein At1g08070, chloroplastic putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like putative pentatricopeptide repeat-containing protein At3g15930 pentatricopeptide repeat-containing protein At3g62890 putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930 putative pentatricopeptide repeat-containing protein At3g15930
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00240 Pyrimidine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00480 Glutathione metabolism 4
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00480 Glutathione metabolism 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4326221 103634872 103840397 100258733 100249083 123069051 123443015 106377392 8056537 102590265 102615537 100845066 100846287 107826010
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