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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-r.5   100250596   ATP-dependent DNA helicase 2 subunit KU80 
 vvi-u.5   100250596   ATP-dependent DNA helicase 2 subunit KU80 
 vvi-u.5   100255780   ATP-dependent DNA helicase 2 subunit KU80 
 ath-u.5   KU80   Ku80 family protein 
 gma-u.5   100781545   ATP-dependent DNA helicase 2 subunit KU80 
 bra-r.6   103833047   ATP-dependent DNA helicase 2 subunit KU80 
 ppo-u.5   7464861   ATP-dependent DNA helicase 2 subunit KU80 
 mtr-u.5   11423056   ATP-dependent DNA helicase 2 subunit KU80 
 ghi-r.1   107941746   ATP-dependent DNA helicase 2 subunit KU80 
 ghi-r.1   107911912   ATP-dependent DNA helicase 2 subunit KU80 
 bna-r.1   106429361   ATP-dependent DNA helicase 2 subunit KU80 
 cit-r.1   102626662   ATP-dependent DNA helicase 2 subunit KU80 
 sly-u.5   101253129   ATP-dependent DNA helicase 2 subunit KU80 
 sot-r.1   102579031   ATP-dependent DNA helicase 2 subunit KU80 
 nta-r.1   107773758   ATP-dependent DNA helicase 2 subunit KU80-like 
 nta-r.1   107831338   ATP-dependent DNA helicase 2 subunit KU80 
 osa-u.5   9267125   ATP-dependent DNA helicase 2 subunit KU80-like 
 zma-u.5   100281554   uncharacterized LOC100281554 
 tae-r.2   123114443   ATP-dependent DNA helicase 2 subunit KU80 
 tae-r.2   123123936   ATP-dependent DNA helicase 2 subunit KU80 
 tae-r.2   101290622   ATP-dependent DNA helicase 2 subunit KU80 
 hvu-r.1   123395211   ATP-dependent DNA helicase 2 subunit KU80 
 sbi-r.1   8059256   ATP-dependent DNA helicase 2 subunit KU80 
 bdi-r.1   100830366   ATP-dependent DNA helicase 2 subunit KU80 
 cre-r.1   CHLRE_10g423800v5   uncharacterized protein 

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Top 50 coexpressed genes to 100250596 (vvi-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100250596 (vvi-r.5 coexpression data)

CoexMap"100250596"


vviLOC100250596 | Entrez gene ID : 100250596      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 1 1 1 2 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03450 [list] [network] Non-homologous end-joining (9 genes)
GO BP
GO:0071480 [list] [network] cellular response to gamma radiation  (3 genes)  IEA  
GO:0071481 [list] [network] cellular response to X-ray  (3 genes)  IEA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (11 genes)  IEA  
GO:0000723 [list] [network] telomere maintenance  (22 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (111 genes)  IEA  
GO CC
GO:0043564 [list] [network] Ku70:Ku80 complex  (3 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2597 genes)  IEA  
GO MF
GO:0042162 [list] [network] telomeric DNA binding  (20 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (32 genes)  IEA  
GO:0003678 [list] [network] DNA helicase activity  (38 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (436 genes)  IEA  
Protein XP_002273349.2 [sequence] [blastp]
XP_019081290.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 2,  nucl 1,  chlo_mito 1  (predict for XP_002273349.2)
cyto 6,  chlo 2,  nucl 1,  cysk 1,  golg 1,  cysk_nucl 1  (predict for XP_019081290.1)
Subcellular
localization
TargetP
scret 7,  other 4  (predict for XP_002273349.2)
other 6,  scret 4  (predict for XP_019081290.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-r.5
for
100250596
vvi-u.5
for
100250596
vvi-u.5
for
100255780
ath-u.5
for
KU80
gma-u.5
for
100781545
bra-r.6
for
103833047
ppo-u.5
for
7464861
mtr-u.5
for
11423056
ghi-r.1
for
107941746
ghi-r.1
for
107911912
bna-r.1
for
106429361
cit-r.1
for
102626662
sly-u.5
for
101253129
sot-r.1
for
102579031
nta-r.1
for
107773758
nta-r.1
for
107831338
osa-u.5
for
9267125
zma-u.5
for
100281554
tae-r.2
for
123114443
tae-r.2
for
123123936
tae-r.2
for
101290622
hvu-r.1
for
123395211
sbi-r.1
for
8059256
bdi-r.1
for
100830366
cre-r.1
for
CHLRE_10g423800v5


Ortholog ID: 11079
Species vvi vvi ath gma bra ppo mtr ghi ghi bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100250596 LOC100255780 KU80 LOC100781545 LOC103833047 LOC7464861 LOC11423056 LOC107941746 LOC107911912 LOC106429361 LOC102626662 LOC101253129 LOC102579031 LOC107773758 LOC107831338 LOC9267125 LOC100281554 LOC123114443 LOC123123936 LOC101290622 LOC123395211 LOC8059256 LOC100830366 CHLRE_10g423800v5
Function* ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 Ku80 family protein ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80-like ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80-like uncharacterized LOC100281554 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 3
gma03030 DNA replication 2
gma03420 Nucleotide excision repair 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 3
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03450 Non-homologous end-joining 4
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03450 Non-homologous end-joining 4
ghi03440 Homologous recombination 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03450 Non-homologous end-joining 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 3
osa04145 Phagosome 2
osa00520 Amino sugar and nucleotide sugar metabolism 2
osa01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00340 Histidine metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03450 Non-homologous end-joining 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03450 Non-homologous end-joining 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03450 Non-homologous end-joining 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03430 Mismatch repair 3
bdi03460 Fanconi anemia pathway 2
bdi03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100250596 100255780 841223 100781545 103833047 7464861 11423056 107941746 107911912 106429361 102626662 101253129 102579031 107773758 107831338 9267125 100281554 123114443 123123936 101290622 123395211 8059256 100830366 5728221
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