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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100244885   pentatricopeptide repeat-containing protein At3g13880 
 vvi-r.5   100244885   pentatricopeptide repeat-containing protein At3g13880 
 ath-u.5   AT3G13880   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103842513   pentatricopeptide repeat-containing protein At3g13880 
 mtr-u.5   25495661   pentatricopeptide repeat-containing protein At3g13880 
 ghi-r.1   107920766   pentatricopeptide repeat-containing protein At3g13880 
 ghi-r.1   107895070   pentatricopeptide repeat-containing protein At3g13880 
 osa-u.5   107280234   pentatricopeptide repeat-containing protein At3g13880-like 
 zma-u.5   103654647   pentatricopeptide repeat-containing protein At3g13880 
 zma-u.5   101202727   uncharacterized LOC101202727 
 hvu-r.1   123445572   pentatricopeptide repeat-containing protein At3g13880-like 
 sbi-r.1   8077389   pentatricopeptide repeat-containing protein At3g13880 
 sbi-r.1   8057856   pentatricopeptide repeat-containing protein At3g13880 
 bdi-r.1   100846798   pentatricopeptide repeat-containing protein At3g13880 
 bdi-r.1   100840864   pentatricopeptide repeat-containing protein At3g13880 

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Top 50 coexpressed genes to 100244885 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100244885 (vvi-u.5 coexpression data)

CoexMap"100244885"


vviLOC100244885 | Entrez gene ID : 100244885      
Species vvi ath bra mtr ghi osa zma hvu sbi bdi gma cit sot sly tae bna ppo cre nta
Paralog 2 1 1 1 2 1 2 1 2 2 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (811 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_059590925.1 [sequence] [blastp]
XP_059590926.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_059590925.1)
chlo 4,  cyto 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_059590926.1)
Subcellular
localization
TargetP
other 8  (predict for XP_059590925.1)
other 8  (predict for XP_059590926.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100244885
vvi-r.5
for
100244885
ath-u.5
for
AT3G13880
bra-r.6
for
103842513
mtr-u.5
for
25495661
ghi-r.1
for
107920766
ghi-r.1
for
107895070
osa-u.5
for
107280234
zma-u.5
for
103654647
zma-u.5
for
101202727
hvu-r.1
for
123445572
sbi-r.1
for
8077389
sbi-r.1
for
8057856
bdi-r.1
for
100846798
bdi-r.1
for
100840864


Ortholog ID: 10767
Species vvi ath bra mtr ghi ghi osa zma zma hvu sbi sbi bdi bdi
Symbol LOC100244885 AT3G13880 LOC103842513 LOC25495661 LOC107920766 LOC107895070 LOC107280234 LOC103654647 LOC101202727 LOC123445572 LOC8077389 LOC8057856 LOC100846798 LOC100840864
Function* pentatricopeptide repeat-containing protein At3g13880 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880-like pentatricopeptide repeat-containing protein At3g13880 uncharacterized LOC101202727 pentatricopeptide repeat-containing protein At3g13880-like pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 11
ghi00360 Phenylalanine metabolism 9
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi00941 Flavonoid biosynthesis 2
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100244885 820601 103842513 25495661 107920766 107895070 107280234 103654647 101202727 123445572 8077389 8057856 100846798 100840864
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