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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107895070   pentatricopeptide repeat-containing protein At3g13880 
 ghi-r.1   107920766   pentatricopeptide repeat-containing protein At3g13880 
 ath-u.5   AT3G13880   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103842513   pentatricopeptide repeat-containing protein At3g13880 
 vvi-u.5   100244885   pentatricopeptide repeat-containing protein At3g13880 
 mtr-u.5   25495661   pentatricopeptide repeat-containing protein At3g13880 
 osa-u.5   107280234   pentatricopeptide repeat-containing protein At3g13880-like 
 zma-u.5   101202727   uncharacterized LOC101202727 
 zma-u.5   103654647   pentatricopeptide repeat-containing protein At3g13880 
 hvu-r.1   123445572   pentatricopeptide repeat-containing protein At3g13880-like 
 sbi-r.1   8077389   pentatricopeptide repeat-containing protein At3g13880 
 sbi-r.1   8057856   pentatricopeptide repeat-containing protein At3g13880 
 bdi-r.1   100846798   pentatricopeptide repeat-containing protein At3g13880 
 bdi-r.1   100840864   pentatricopeptide repeat-containing protein At3g13880 

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Top 50 coexpressed genes to 107895070 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107895070 (ghi-r.1 coexpression data)

CoexMap""


ghiLOC107895070 | Entrez gene ID : 107895070    
Species ghi ath bra vvi mtr osa zma hvu sbi bdi nta bna gma ppo sot cre sly cit tae
Paralog 2 1 1 1 1 1 2 1 2 2 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function pentatricopeptide repeat-containing protein At3g13880
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (557 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (14879 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016675771.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  mito 1,  vacu 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016675771.1)
Subcellular
localization
TargetP
scret 3  (predict for XP_016675771.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107895070
ghi-r.1
for
107920766
ath-u.5
for
AT3G13880
bra-r.6
for
103842513
vvi-u.5
for
100244885
mtr-u.5
for
25495661
osa-u.5
for
107280234
zma-u.5
for
101202727
zma-u.5
for
103654647
hvu-r.1
for
123445572
sbi-r.1
for
8077389
sbi-r.1
for
8057856
bdi-r.1
for
100846798
bdi-r.1
for
100840864

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Ortholog ID: 10767
Species ghi ghi ath bra vvi mtr osa zma zma hvu sbi sbi bdi bdi
Symbol LOC107895070 LOC107920766 AT3G13880 LOC103842513 LOC100244885 LOC25495661 LOC107280234 LOC101202727 LOC103654647 LOC123445572 LOC8077389 LOC8057856 LOC100846798 LOC100840864
Function* pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880-like uncharacterized LOC101202727 pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880-like pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880 pentatricopeptide repeat-containing protein At3g13880
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 11
ghi00360 Phenylalanine metabolism 9
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi00941 Flavonoid biosynthesis 2
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107895070 107920766 820601 103842513 100244885 25495661 107280234 101202727 103654647 123445572 8077389 8057856 100846798 100840864
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