ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	109123768	uncharacterized LOC109123768
vvi-r.5	109123768	uncharacterized LOC109123768
vvi-u.5	100260841	uncharacterized LOC100260841
ath-u.5	AT2G28600	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	100809099	pre-mRNA-processing ATP-dependent RNA helicase prp5
ppo-u.5	7455505	pre-mRNA-processing ATP-dependent RNA helicase PRP5
mtr-u.5	11424303	pre-mRNA-processing ATP-dependent RNA helicase prp5
sly-u.5	101253955	DEAD-box ATP-dependent RNA helicase 5
osa-u.5	4351499	DEAD-box ATP-dependent RNA helicase 5-like
osa-u.5	9270769	uncharacterized LOC9270769
zma-u.5	100284481	ATP-dependent RNA helicase

functional annotation

KEGG

GO BP

GO:0034063 [list] [network] stress granule assembly	(8 genes)	IEA
GO:0033962 [list] [network] P-body assembly	(11 genes)	IEA

GO CC

GO:0010494 [list] [network] cytoplasmic stress granule	(11 genes)	IEA
GO:0000932 [list] [network] P-body	(39 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(233 genes)

IEA

Protein

XP_059597873.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 5, chlo 2, vacu 1, chlo_mito 1

(predict for XP_059597873.1)

Subcellular
localization
TargetP

other 4

(predict for XP_059597873.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 109123768	vvi-r.5 for 109123768	vvi-u.5 for 100260841	ath-u.5 for AT2G28600	gma-u.5 for 100809099	ppo-u.5 for 7455505	mtr-u.5 for 11424303	sly-u.5 for 101253955	osa-u.5 for 4351499	osa-u.5 for 9270769	zma-u.5 for 100284481

Ortholog ID: 10682

Species

vvi

ath

gma

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC109123768

uncharacterized LOC100260841

P-loop containing nucleoside triphosphate hydrolases superfamily protein

pre-mRNA-processing ATP-dependent RNA helicase prp5

pre-mRNA-processing ATP-dependent RNA helicase PRP5

pre-mRNA-processing ATP-dependent RNA helicase prp5

ATP-dependent RNA helicase DBP3

ATP-dependent RNA helicase DBP3-like

DEAD-box ATP-dependent RNA helicase 5

uncharacterized LOC102578489

uncharacterized LOC107760729

uncharacterized LOC107802981

DEAD-box ATP-dependent RNA helicase 5-like

uncharacterized LOC9270769

ATP-dependent RNA helicase

probable ATP-dependent RNA helicase ddx5

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	5
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00230	Purine metabolism	3
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	5

Expression

Expression pattern

Entrez Gene ID^*

109123768

100260841

817408

100809099

7455505

11424303

107950199

106433605

106443649

102629442

101253955

102578489

107760729

107802981

4351499

9270769

100284481

123086358

123096632

123448162

8074878

100844213

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 109123768 (vvi-u.5 coexpression data)

Top 50 enrichment test to 109123768 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	3	1	1	1	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 109123768 (vvi-u.5 coexpression data)

Top 50 enrichment test to 109123768 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**