ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-r.6	103625810	histone H1-like
zma-u.5	103625810	histone H1-like
zma-m.5	103625810	histone H1-like
zma-u.5	541964	histone H1-like protein
zma-u.5	542385	histone I
zma-u.5	100382582	histone one (H1)
sbi-r.1	8057614	histone H1
sbi-r.1	8056631	histone H1
sbi-r.1	8081244	histone H1
osa-u.5	4342583	histone H1
osa-u.5	4335314	histone H1
osa-u.5	4334439	histone H1
tae-r.2	123105439	histone H1-like
tae-r.2	123054118	histone H1-like
tae-r.2	123041755	histone H1
hvu-r.1	123452741	histone H1-like
hvu-r.1	123452742	histone H1
hvu-r.1	123427445	histone H1-like
bdi-r.1	100833820	histone H1
bdi-r.1	100834570	histone H1
bdi-r.1	100829326	histone H1
ath-u.5	HIS1-3	histone H1-3
ath-u.5	AT1G06760	winged-helix DNA-binding transcription factor family protein
ath-u.5	AT2G30620	winged-helix DNA-binding transcription factor family protein
gma-u.5	100785055	histone H1
gma-u.5	100795994	histone H1
gma-u.5	100500169	uncharacterized LOC100500169
sly-u.5	544142	H1 histone-like protein
sly-u.5	H1	histone H1
sly-u.5	101248710	histone H1-like
bra-r.6	103857332	histone H1.2
bra-r.6	103867940	histone H1.2
bra-r.6	103837838	histone H1
vvi-u.5	100247613	histone H1
vvi-u.5	100254064	histone H1
vvi-u.5	100259836	histone H1
ppo-u.5	7479991	histone H1.2
ppo-u.5	7474614	histone H1-like
ppo-u.5	18099660	histone H1
mtr-u.5	25484336	histone H1
mtr-u.5	25484327	histone H1
ghi-r.1	107893211	histone H1
ghi-r.1	107913009	histone H1
ghi-r.1	107912347	histone H1
bna-r.1	106415530	histone H1.2
bna-r.1	106399610	histone H1.1-like
bna-r.1	106406187	histone H1.2-like
sot-r.1	102591139	histone H1-like
sot-r.1	102583906	histone H1
cit-r.1	102612106	histone H1
cit-r.1	102626409	histone H1
cit-r.1	102618662	histone H1-like
nta-r.1	107832044	histone H1-like
nta-r.1	107830754	histone H1-like
nta-r.1	107766305	uncharacterized LOC107766305
cre-r.1	CHLRE_06g275900v5	uncharacterized protein
cre-r.1	CHLRE_13g567450v5	uncharacterized protein

Top 50 coexpressed genes to 103625810 (zma-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103625810 (zma-r.6 coexpression data)

CoexMap"103625810"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045910 [list] [network] negative regulation of DNA recombination	(18 genes)	IEA
GO:0030261 [list] [network] chromosome condensation	(24 genes)	IEA
GO:0006334 [list] [network] nucleosome assembly	(36 genes)	IEA

GO CC

GO:0000786 [list] [network] nucleosome	(103 genes)	IEA
GO:0005634 [list] [network] nucleus	(3371 genes)	IEA

GO MF

GO:0031492 [list] [network] nucleosomal DNA binding	(14 genes)	IEA
GO:0030527 [list] [network] structural constituent of chromatin	(90 genes)	IEA
GO:0003690 [list] [network] double-stranded DNA binding	(580 genes)	IEA

Protein

NP_001306632.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1

(predict for NP_001306632.1)

Subcellular
localization
TargetP

other 8, chlo 3

(predict for NP_001306632.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-r.6 for 103625810	zma-u.5 for 103625810	zma-m.5 for 103625810	zma-u.5 for 541964	zma-u.5 for 542385	zma-u.5 for 100382582	sbi-r.1 for 8057614	sbi-r.1 for 8056631	sbi-r.1 for 8081244	osa-u.5 for 4342583	osa-u.5 for 4335314	osa-u.5 for 4334439	tae-r.2 for 123105439	tae-r.2 for 123054118	tae-r.2 for 123041755	hvu-r.1 for 123452741	hvu-r.1 for 123452742	hvu-r.1 for 123427445	bdi-r.1 for 100833820	bdi-r.1 for 100834570	bdi-r.1 for 100829326	ath-u.5 for HIS1-3	ath-u.5 for AT1G06760	ath-u.5 for AT2G30620	gma-u.5 for 100785055	gma-u.5 for 100795994	gma-u.5 for 100500169	sly-u.5 for 544142	sly-u.5 for H1	sly-u.5 for 101248710	bra-r.6 for 103857332	bra-r.6 for 103867940	bra-r.6 for 103837838	vvi-u.5 for 100247613	vvi-u.5 for 100254064	vvi-u.5 for 100259836	ppo-u.5 for 7479991	ppo-u.5 for 7474614	ppo-u.5 for 18099660	mtr-u.5 for 25484336	mtr-u.5 for 25484327	ghi-r.1 for 107893211	ghi-r.1 for 107913009	ghi-r.1 for 107912347	bna-r.1 for 106415530	bna-r.1 for 106399610	bna-r.1 for 106406187	sot-r.1 for 102591139	sot-r.1 for 102583906	cit-r.1 for 102612106	cit-r.1 for 102626409	cit-r.1 for 102618662	nta-r.1 for 107832044	nta-r.1 for 107830754	nta-r.1 for 107766305	cre-r.1 for CHLRE_06g275900v5	cre-r.1 for CHLRE_13g567450v5

Ortholog

Ortholog ID: 718

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

HIS1-3

Function^*

histone H1-like

histone H1-like protein

histone one (H1) 101

histone H1

histone H1-like

histone H1

histone H1-like

histone H1

histone H1-3

winged-helix DNA-binding transcription factor family protein

histone H1

H1/H5 domain-containing protein

histone H1

H1 histone-like protein

histone H1

histone H1-like

histone H1.2

histone H1

histone H1.2-like

histone H1.2

histone H1-like

histone H1

histone H1-like

uncharacterized LOC107766305

histone H1-like

histone H1.2

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00270	Cysteine and methionine metabolism	2
zma00670	One carbon pool by folate	2
zma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

103625810

541964

541973

8057614

8056631

8081244

4342583

4335314

4334439

123054118

123054116

123123232

123452741

123452742

123452756

100833820

100834570

100829326

816317

837187

817612

100775944

100306187

100797229

544142

778281

101245495

103857332

103867940

103837838

100247613

100254064

100251147

7460433

18101583

18099218

25484327

25484335

107913009

107924311

107894274

106406187

106348386

106426396

102591139

102583906

102586395

102612106

102626409

102618662

107766305

107808821

107785532

5721745

5719074

The preparation time of this page was 0.6 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	3	3	3	3	3	3	3	3	3	3	3	2	3	3	2	3	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103625810 (zma-r.6 coexpression data)

Top 50 enrichment test to 103625810 (zma-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**