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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-r.6   103643777   nuclear poly(A) polymerase 1 
 zma-u.5   103643777   nuclear poly(A) polymerase 1 
 zma-m.5   103643777   nuclear poly(A) polymerase 1 
 zma-u.5   100382126   uncharacterized LOC100382126 
 zma-u.5   100274689   uncharacterized LOC100274689 
 zma-u.5   100278989   nuclear poly(A) polymerase 4 
 sbi-r.1   8056755   nuclear poly(A) polymerase 1 
 sbi-r.1   8061974   nuclear poly(A) polymerase 4 
 sbi-r.1   8085547   nuclear poly(A) polymerase 4 
 osa-u.5   9268632   nuclear poly(A) polymerase 4 
 osa-u.5   4328790   nuclear poly(A) polymerase 4 
 osa-u.5   4340886   nuclear poly(A) polymerase 1 
 tae-r.2   123163888   nuclear poly(A) polymerase 4 
 tae-r.2   123096049   nuclear poly(A) polymerase 1 
 tae-r.2   123086936   nuclear poly(A) polymerase 1 
 hvu-r.1   123410067   nuclear poly(A) polymerase 4-like 
 hvu-r.1   123447712   nuclear poly(A) polymerase 1-like 
 hvu-r.1   123404828   nuclear poly(A) polymerase 4-like 
 bdi-r.1   100844248   nuclear poly(A) polymerase 4 
 bdi-r.1   100827786   nuclear poly(A) polymerase 1 
 bdi-r.1   100823067   nuclear poly(A) polymerase 4 
 ath-u.5   PAPS2   poly(A) polymerase 2 
 ath-u.5   nPAP   nuclear poly(a) polymerase 
 ath-u.5   PAPS1   poly(A) polymerase 1 
 gma-u.5   100798218   nuclear poly(A) polymerase 4 
 gma-u.5   100815801   nuclear poly(A) polymerase 1 
 gma-u.5   100802620   nuclear poly(A) polymerase 4 
 sly-u.5   101268462   nuclear poly(A) polymerase 4 
 sly-u.5   101266027   nuclear poly(A) polymerase 1 
 sly-u.5   101247241   nuclear poly(A) polymerase 4-like 
 bra-r.6   103850374   nuclear poly(A) polymerase 4 
 bra-r.6   103864694   nuclear poly(A) polymerase 2 
 bra-r.6   103842726   nuclear poly(A) polymerase 1 
 vvi-u.5   100268087   nuclear poly(A) polymerase 1 
 vvi-u.5   100263460   nuclear poly(A) polymerase 4 
 ppo-u.5   7463733   nuclear poly(A) polymerase 4 
 ppo-u.5   7462286   nuclear poly(A) polymerase 4 
 ppo-u.5   7453892   nuclear poly(A) polymerase 1 
 mtr-u.5   11422260   nuclear poly(A) polymerase 1 
 mtr-u.5   11434036   nuclear poly(A) polymerase 4 
 mtr-u.5   25490147   nuclear poly(A) polymerase 4 
 ghi-r.1   107890837   nuclear poly(A) polymerase 1 
 ghi-r.1   107898378   nuclear poly(A) polymerase 1 
 ghi-r.1   107906976   nuclear poly(A) polymerase 4 
 bna-r.1   125591720   nuclear poly(A) polymerase 1-like 
 sot-r.1   102597372   nuclear poly(A) polymerase 4 
 sot-r.1   102600244   nuclear poly(A) polymerase 4-like 
 sot-r.1   102594846   nuclear poly(A) polymerase 1 
 cit-r.1   102606839   nuclear poly(A) polymerase 1 
 cit-r.1   102613009   nuclear poly(A) polymerase 4-like 
 cit-r.1   102621281   nuclear poly(A) polymerase 4-like 
 nta-r.1   107766494   nuclear poly(A) polymerase 4 
 nta-r.1   107778577   nuclear poly(A) polymerase 4-like 
 nta-r.1   107787916   nuclear poly(A) polymerase 4 
 cre-r.1   CHLRE_10g433750v5   uncharacterized protein 

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Top 50 coexpressed genes to 103643777 (zma-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103643777 (zma-r.6 coexpression data)

CoexMap"103643777"


zmaLOC103643777 | Entrez gene ID : 103643777      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 6 3 3 3 3 3 3 3 3 3 2 3 3 3 1 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03015 [list] [network] mRNA surveillance pathway (165 genes)
GO BP
GO:0031123 [list] [network] RNA 3'-end processing  (77 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:1990817 [list] [network] poly(A) RNA polymerase activity  (12 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein XP_008665161.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 3  (predict for XP_008665161.1)
Subcellular
localization
TargetP
other 8  (predict for XP_008665161.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-r.6
for
103643777
zma-u.5
for
103643777
zma-m.5
for
103643777
zma-u.5
for
100382126
zma-u.5
for
100274689
zma-u.5
for
100278989
sbi-r.1
for
8056755
sbi-r.1
for
8061974
sbi-r.1
for
8085547
osa-u.5
for
9268632
osa-u.5
for
4328790
osa-u.5
for
4340886
tae-r.2
for
123163888
tae-r.2
for
123096049
tae-r.2
for
123086936
hvu-r.1
for
123410067
hvu-r.1
for
123447712
hvu-r.1
for
123404828
bdi-r.1
for
100844248
bdi-r.1
for
100827786
bdi-r.1
for
100823067
ath-u.5
for
PAPS2
ath-u.5
for
nPAP
ath-u.5
for
PAPS1
gma-u.5
for
100798218
gma-u.5
for
100815801
gma-u.5
for
100802620
sly-u.5
for
101268462
sly-u.5
for
101266027
sly-u.5
for
101247241
bra-r.6
for
103850374
bra-r.6
for
103864694
bra-r.6
for
103842726
vvi-u.5
for
100268087
vvi-u.5
for
100263460
ppo-u.5
for
7463733
ppo-u.5
for
7462286
ppo-u.5
for
7453892
mtr-u.5
for
11422260
mtr-u.5
for
11434036
mtr-u.5
for
25490147
ghi-r.1
for
107890837
ghi-r.1
for
107898378
ghi-r.1
for
107906976
bna-r.1
for
125591720
sot-r.1
for
102597372
sot-r.1
for
102600244
sot-r.1
for
102594846
cit-r.1
for
102606839
cit-r.1
for
102613009
cit-r.1
for
102621281
nta-r.1
for
107766494
nta-r.1
for
107778577
nta-r.1
for
107787916
cre-r.1
for
CHLRE_10g433750v5


Ortholog ID: 1121
Species zma zma sbi sbi sbi osa osa osa tae tae tae hvu hvu hvu bdi bdi bdi ath ath ath gma gma gma sly sly sly bra bra bra vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna sot sot sot cit cit cit nta nta nta cre
Symbol LOC100274689 LOC100280371 LOC8056755 LOC8061974 LOC8085547 LOC9268632 LOC4328790 LOC4340886 LOC123086936 LOC123091042 LOC123137056 LOC123410067 LOC123447712 LOC123404828 LOC100844248 LOC100827786 LOC100823067 PAPS2 nPAP PAPS1 LOC100798218 LOC100802620 LOC100816915 LOC101268462 LOC101266027 LOC101247241 LOC103850374 LOC103864694 LOC103835928 LOC100268087 LOC100263460 LOC7463733 LOC7462286 LOC7453892 LOC11422260 LOC11434036 LOC11414390 LOC107898378 LOC107951394 LOC107891713 LOC106365247 LOC106369039 LOC102597372 LOC102600244 LOC102594846 LOC102613009 LOC102621281 LOC102622420 LOC107778577 LOC107787916 LOC107762435 CHLRE_10g433750v5
Function* uncharacterized LOC100274689 Nuclear poly(A) polymerase 2 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 1-like nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 poly(A) polymerase 2 nuclear poly(a) polymerase poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 2 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 1-like nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 5
zma03013 Nucleocytoplasmic transport 3
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03015 mRNA surveillance pathway 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03015 mRNA surveillance pathway 2
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath04626 Plant-pathogen interaction 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 9
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
ghi00730 Thiamine metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
ghi00730 Thiamine metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03015 mRNA surveillance pathway 4
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 8
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100274689 100280371 8056755 8061974 8085547 9268632 4328790 4340886 123086936 123091042 123137056 123410067 123447712 123404828 100844248 100827786 100823067 817127 829421 838378 100798218 100802620 100816915 101268462 101266027 101247241 103850374 103864694 103835928 100268087 100263460 7463733 7462286 7453892 11422260 11434036 11414390 107898378 107951394 107891713 106365247 106369039 102597372 102600244 102594846 102613009 102621281 102622420 107778577 107787916 107762435 5728026
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