ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4340886	nuclear poly(A) polymerase 1
osa-r.6	4340886	nuclear poly(A) polymerase 1
osa-m.8	4340886	nuclear poly(A) polymerase 1
osa-e.1	4340886	nuclear poly(A) polymerase 1
osa-u.5	9268632	nuclear poly(A) polymerase 4
osa-u.5	4328790	nuclear poly(A) polymerase 4
zma-u.5	100280371	Nuclear poly(A) polymerase 2
zma-u.5	100382126	uncharacterized LOC100382126
ath-u.5	PAPS2	poly(A) polymerase 2
ath-u.5	nPAP	nuclear poly(a) polymerase
ath-u.5	PAPS1	poly(A) polymerase 1
gma-u.5	100783237	nuclear poly(A) polymerase 4
gma-u.5	100798218	nuclear poly(A) polymerase 4
gma-u.5	100802620	nuclear poly(A) polymerase 4
sly-u.5	101247241	nuclear poly(A) polymerase 4-like
sly-u.5	101266027	nuclear poly(A) polymerase 1
sly-u.5	101268462	nuclear poly(A) polymerase 4
vvi-u.5	100252483	nuclear poly(A) polymerase 1
vvi-u.5	100268087	nuclear poly(A) polymerase 1
ppo-u.5	7463733	nuclear poly(A) polymerase 4
ppo-u.5	7462286	nuclear poly(A) polymerase 4
ppo-u.5	7453892	nuclear poly(A) polymerase 1
mtr-u.5	25490147	nuclear poly(A) polymerase 4
mtr-u.5	11434036	nuclear poly(A) polymerase 4
mtr-u.5	11414390	nuclear poly(A) polymerase 1

Annotation

functional annotation

KEGG

osa03015 [list] [network] mRNA surveillance pathway (114 genes)

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(3003 genes)

IEA

GO MF

GO:1990817 [list] [network] poly(A) RNA polymerase activity	(9 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1223 genes)	IEA

Protein

XP_015643768.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 1, nucl 1, vacu 1, pero 1, cysk 1, chlo_mito 1, nucl_plas 1

(predict for XP_015643768.1)

Subcellular
localization
TargetP

other 8

(predict for XP_015643768.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4340886	osa-r.6 for 4340886	osa-m.8 for 4340886	osa-e.1 for 4340886	osa-u.5 for 9268632	osa-u.5 for 4328790	zma-u.5 for 100280371	zma-u.5 for 100382126	ath-u.5 for PAPS2	ath-u.5 for nPAP	ath-u.5 for PAPS1	gma-u.5 for 100783237	gma-u.5 for 100798218	gma-u.5 for 100802620	sly-u.5 for 101247241	sly-u.5 for 101266027	sly-u.5 for 101268462	vvi-u.5 for 100252483	vvi-u.5 for 100268087	ppo-u.5 for 7463733	ppo-u.5 for 7462286	ppo-u.5 for 7453892	mtr-u.5 for 25490147	mtr-u.5 for 11434036	mtr-u.5 for 11414390

Ortholog

Ortholog ID: 1121

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

PAPS2

PAPS1

Function^*

nuclear poly(A) polymerase 4

nuclear poly(A) polymerase 1

nuclear poly(A) polymerase 4

nuclear poly(A) polymerase 1

nuclear poly(A) polymerase 4-like

nuclear poly(A) polymerase 4

nuclear poly(A) polymerase 1

uncharacterized LOC100274689

nuclear poly(A) polymerase 4

poly(A) polymerase 2

poly(A) polymerase 1

nuclear poly(A) polymerase 4

nuclear poly(A) polymerase 1

nuclear poly(A) polymerase 4-like

nuclear poly(A) polymerase 1

nuclear poly(A) polymerase 2

nuclear poly(A) polymerase 4

nuclear poly(A) polymerase 1

nuclear poly(A) polymerase 4

nuclear poly(A) polymerase 1

nuclear poly(A) polymerase 4

nuclear poly(A) polymerase 1

nuclear poly(A) polymerase 4-like

nuclear poly(A) polymerase 1

nuclear poly(A) polymerase 4-like

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03015	mRNA surveillance pathway	2
bdi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	3
bdi03015	mRNA surveillance pathway	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	5
zma03013	Nucleocytoplasmic transport	3
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath04626	Plant-pathogen interaction	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	9
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	7
ghi00730	Thiamine metabolism	2
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	4
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	8
cre03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

4328790

4340886

123137056

123086936

123404828

123410067

100823067

100827786

100274689

8061974

8085547

817127

838378

100798218

100816915

101247241

101266027

103835928

103864694

100263460

100268087

7463733

7462286

11422260

11434036

107891713

107898378

106369039

102594846

102600244

102613009

102621281

107762435

107778577

5728026

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4340886 (osa-u.5 coexpression data)

Top 50 enrichment test to 4340886 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	2	3	3	3	2	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4340886 (osa-u.5 coexpression data)

Top 50 enrichment test to 4340886 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**