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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-r.6   542099   Cold-regulated 413 plasma membrane protein 2 
 zma-u.5   542099   Cold-regulated 413 plasma membrane protein 2 
 zma-m.5   542099   Cold-regulated 413 plasma membrane protein 2 
 zma-u.5   100282221   cold acclimation protein COR413-PM1 
 sbi-r.1   8086182   cold-regulated 413 plasma membrane protein 2 
 osa-u.5   4334237   cold-regulated 413 plasma membrane protein 2 
 tae-r.2   123105151   cold-regulated 413 plasma membrane protein 1 
 tae-r.2   543353   cold-regulated 413 plasma membrane protein 1 
 tae-r.2   123105150   cold-regulated 413 plasma membrane protein 1 
 hvu-r.1   123452399   cold-regulated 413 plasma membrane protein 1-like 
 hvu-r.1   123452401   cold-regulated 413 plasma membrane protein 1-like 
 bdi-r.1   100844112   cold-regulated 413 plasma membrane protein 1 
 ath-u.5   COR413-PM1   cold regulated 413 plasma membrane 1 
 ath-u.5   COR413-PM2   cold-regulated 413-plasma membrane 2 
 ath-u.5   AT4G37220   Cold acclimation protein WCOR413 family 
 gma-u.5   COR1   cold-regulated protein 
 gma-u.5   100811430   cold-regulated 413 plasma membrane protein 1 
 gma-u.5   100817084   cold-regulated 413 plasma membrane protein 2 
 sly-u.5   101259682   WCOR413-like plant cold acclimation protein 
 sly-u.5   101259505   cold-regulated 413 plasma membrane protein 2 
 bra-r.6   103860669   cold-regulated 413 plasma membrane protein 2 
 bra-r.6   103835009   cold-regulated 413 plasma membrane protein 4 
 vvi-u.5   100248690   cold-regulated 413 plasma membrane protein 2 
 vvi-u.5   100267774   cold-regulated 413 plasma membrane protein 2 
 ppo-u.5   7480606   cold-regulated 413 plasma membrane protein 1 
 ppo-u.5   7456406   cold-regulated 413 plasma membrane protein 1 
 ppo-u.5   18101203   cold-regulated 413 plasma membrane protein 2 
 mtr-u.5   11414899   cold-regulated 413 plasma membrane protein 1 
 mtr-u.5   25482682   cold-regulated 413 plasma membrane protein 1 
 ghi-r.1   121209662   cold-regulated 413 plasma membrane protein 2 
 ghi-r.1   107898702   cold-regulated 413 plasma membrane protein 2 
 ghi-r.1   107911998   cold-regulated 413 plasma membrane protein 2 
 bna-r.1   106425620   cold-regulated 413 plasma membrane protein 2 
 bna-r.1   106439854   cold-regulated 413 plasma membrane protein 1 
 bna-r.1   125598313   cold-regulated 413 plasma membrane protein 4-like 
 sot-r.1   102589207   cold-regulated 413 plasma membrane protein 2-like 
 sot-r.1   102596410   cold-regulated 413 plasma membrane protein 2-like 
 cit-r.1   102614347   cold-regulated 413 plasma membrane protein 1 
 cit-r.1   102620025   cold-regulated 413 plasma membrane protein 2 
 nta-r.1   107820253   cold-regulated 413 plasma membrane protein 2-like 
 nta-r.1   107779465   cold-regulated 413 plasma membrane protein 1 
 nta-r.1   107819216   cold-regulated 413 plasma membrane protein 2 

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Top 50 coexpressed genes to 542099 (zma-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542099 (zma-r.6 coexpression data)

CoexMap"542099"


zmaLOC542099 | Entrez gene ID : 542099      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 1 1 3 2 1 3 3 2 2 2 3 2 3 3 2 2 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0016020 [list] [network] membrane  (3751 genes)  IEA  
GO MF
Protein NP_001105202.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 4,  plas 3,  cyto 1,  golg 1,  nucl_plas 1,  cysk_plas 1,  E.R._plas 1,  mito_plas 1  (predict for NP_001105202.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001105202.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-r.6
for
542099
zma-u.5
for
542099
zma-m.5
for
542099
zma-u.5
for
100282221
sbi-r.1
for
8086182
osa-u.5
for
4334237
tae-r.2
for
123105151
tae-r.2
for
543353
tae-r.2
for
123105150
hvu-r.1
for
123452399
hvu-r.1
for
123452401
bdi-r.1
for
100844112
ath-u.5
for
COR413-PM1
ath-u.5
for
COR413-PM2
ath-u.5
for
AT4G37220
gma-u.5
for
COR1
gma-u.5
for
100811430
gma-u.5
for
100817084
sly-u.5
for
101259682
sly-u.5
for
101259505
bra-r.6
for
103860669
bra-r.6
for
103835009
vvi-u.5
for
100248690
vvi-u.5
for
100267774
ppo-u.5
for
7480606
ppo-u.5
for
7456406
ppo-u.5
for
18101203
mtr-u.5
for
11414899
mtr-u.5
for
25482682
ghi-r.1
for
121209662
ghi-r.1
for
107898702
ghi-r.1
for
107911998
bna-r.1
for
106425620
bna-r.1
for
106439854
bna-r.1
for
125598313
sot-r.1
for
102589207
sot-r.1
for
102596410
cit-r.1
for
102614347
cit-r.1
for
102620025
nta-r.1
for
107820253
nta-r.1
for
107779465
nta-r.1
for
107819216


Ortholog ID: 2376
Species zma zma sbi osa tae tae tae hvu hvu bdi ath ath ath gma gma gma sly sly bra bra vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot cit cit nta nta nta
Symbol LOC542099 LOC100282221 LOC8086182 LOC4334237 LOC543353 LOC123122960 LOC543255 LOC123452399 LOC123452401 LOC100844112 COR413-PM1 COR413-PM2 AT4G37220 LOC100811430 LOC100817084 LOC100810337 LOC101259682 LOC101259505 LOC103860669 LOC103835009 LOC100248690 LOC100267774 LOC7480606 LOC7456406 LOC18101203 LOC11414899 LOC25482682 LOC25482681 LOC121209662 LOC107911998 LOC107942145 LOC106425620 LOC106440012 LOC106445618 LOC102589207 LOC102596410 LOC102614347 LOC102620025 LOC107779465 LOC107819216 LOC107819619
Function* Cold-regulated 413 plasma membrane protein 2 cold acclimation protein COR413-PM1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1-like cold-regulated 413 plasma membrane protein 1-like cold-regulated 413 plasma membrane protein 1 cold regulated 413 plasma membrane 1 cold-regulated 413-plasma membrane 2 Cold acclimation protein WCOR413 family cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 WCOR413-like plant cold acclimation protein cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 4 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2-like cold-regulated 413 plasma membrane protein 2-like cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 5
zma04016 MAPK signaling pathway - plant 5
zma04075 Plant hormone signal transduction 5
zma04070 Phosphatidylinositol signaling system 4
zma00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi03250 Viral life cycle - HIV-1 2
sbi03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04145 Phagosome 5
osa00190 Oxidative phosphorylation 4
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 8
ath00640 Propanoate metabolism 4
ath01210 2-Oxocarboxylic acid metabolism 4
ath01250 Biosynthesis of nucleotide sugars 3
ath00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 4
sly00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 3
vvi00260 Glycine, serine and threonine metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00670 One carbon pool by folate 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00562 Inositol phosphate metabolism 2
ppo04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 6
ppo04016 MAPK signaling pathway - plant 5
ppo02010 ABC transporters 3
ppo00073 Cutin, suberine and wax biosynthesis 2
ppo04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo00190 Oxidative phosphorylation 2
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
mtr04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 12
ghi04016 MAPK signaling pathway - plant 2
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta04142 Lysosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542099 100282221 8086182 4334237 543353 123122960 543255 123452399 123452401 100844112 816092 824247 829876 100811430 100817084 100810337 101259682 101259505 103860669 103835009 100248690 100267774 7480606 7456406 18101203 11414899 25482682 25482681 121209662 107911998 107942145 106425620 106440012 106445618 102589207 102596410 102614347 102620025 107779465 107819216 107819619
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