ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100193574	uncharacterized LOC100193574
zma-r.6	100193574	uncharacterized LOC100193574
zma-u.5	100191432	uncharacterized LOC100191432
zma-u.5	100382646	uncharacterized LOC100382646
zma-u.5	103635880	CASC3/Barentsz eIF4AIII binding
sbi-r.1	8082485	uncharacterized LOC8082485
sbi-r.1	8068978	protein CASC3
osa-u.5	4339434	protein MLN51 homolog
osa-u.5	4324698	uncharacterized LOC4324698
osa-u.5	4326389	protein MLN51 homolog
tae-r.2	123070046	protein MLN51 homolog
tae-r.2	123061401	protein MLN51 homolog
tae-r.2	123064344	protein MLN51 homolog
hvu-r.1	123443820	protein MLN51 homolog
hvu-r.1	123448494	protein MLN51 homolog
bdi-r.1	100839993	protein MLN51 homolog
bdi-r.1	100834495	protein MLN51 homolog
ath-u.5	AT1G80000	CASC3/Barentsz eIF4AIII binding protein
gma-u.5	100816837	protein MLN51 homolog
gma-u.5	100796971	protein MLN51 homolog
gma-u.5	100792594	protein MLN51 homolog
sly-u.5	101247414	protein MLN51 homolog
sly-u.5	101264103	protein MLN51 homolog
bra-r.6	103836036	protein MLN51 homolog
vvi-u.5	100256571	protein MLN51 homolog
ppo-u.5	7478385	protein MLN51 homolog
ppo-u.5	18094746	protein MLN51 homolog
mtr-u.5	25491383	protein MLN51 homolog
ghi-r.1	107944310	protein MLN51 homolog
ghi-r.1	107891690	protein MLN51 homolog
ghi-r.1	107951897	protein MLN51 homolog
bna-r.1	106366560	protein MLN51 homolog
bna-r.1	106353351	protein MLN51 homolog
bna-r.1	106382305	protein MLN51 homolog
sot-r.1	102597201	uncharacterized LOC102597201
sot-r.1	102601682	protein CASC3
cit-r.1	102612593	protein MLN51 homolog
nta-r.1	107783779	protein MLN51 homolog
nta-r.1	107801981	protein MLN51 homolog
nta-r.1	107800827	protein MLN51 homolog
cre-r.1	CHLRE_10g456700v5	uncharacterized protein

Top 50 coexpressed genes to 100193574 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100193574 (zma-u.5 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

uncharacterized LOC100193574

KEGG

GO BP

GO:0006397 [list] [network] mRNA processing

(251 genes)

IEA

GO CC

GO:0035145 [list] [network] exon-exon junction complex

(10 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(346 genes)

IEA

Protein

NP_001304126.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for NP_001304126.1)

Subcellular
localization
TargetP

other 8

(predict for NP_001304126.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100193574	zma-r.6 for 100193574	zma-u.5 for 100191432	zma-u.5 for 100382646	zma-u.5 for 103635880	sbi-r.1 for 8082485	sbi-r.1 for 8068978	osa-u.5 for 4339434	osa-u.5 for 4324698	osa-u.5 for 4326389	tae-r.2 for 123070046	tae-r.2 for 123061401	tae-r.2 for 123064344	hvu-r.1 for 123443820	hvu-r.1 for 123448494	bdi-r.1 for 100839993	bdi-r.1 for 100834495	ath-u.5 for AT1G80000	gma-u.5 for 100816837	gma-u.5 for 100796971	gma-u.5 for 100792594	sly-u.5 for 101247414	sly-u.5 for 101264103	bra-r.6 for 103836036	vvi-u.5 for 100256571	ppo-u.5 for 7478385	ppo-u.5 for 18094746	mtr-u.5 for 25491383	ghi-r.1 for 107944310	ghi-r.1 for 107891690	ghi-r.1 for 107951897	bna-r.1 for 106366560	bna-r.1 for 106353351	bna-r.1 for 106382305	sot-r.1 for 102597201	sot-r.1 for 102601682	cit-r.1 for 102612593	nta-r.1 for 107783779	nta-r.1 for 107801981	nta-r.1 for 107800827	cre-r.1 for CHLRE_10g456700v5

Please wait a moment.

Ortholog

Ortholog ID: 3641

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC100193574

uncharacterized LOC100382646

CASC3/Barentsz eIF4AIII binding

uncharacterized LOC8082485

protein CASC3

protein MLN51 homolog

uncharacterized LOC4324698

protein MLN51 homolog

CASC3/Barentsz eIF4AIII binding protein

protein MLN51 homolog

uncharacterized LOC102597201

protein CASC3

protein MLN51 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	4
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	3
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00020	Citrate cycle (TCA cycle)	2
bdi00785	Lipoic acid metabolism	2
bdi01200	Carbon metabolism	2
bdi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03250	Viral life cycle - HIV-1	3
sly03015	mRNA surveillance pathway	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi03015	mRNA surveillance pathway	3
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	4
nta00970	Aminoacyl-tRNA biosynthesis	2
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	4
nta00970	Aminoacyl-tRNA biosynthesis	2
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03015	mRNA surveillance pathway	4
nta03250	Viral life cycle - HIV-1	4
nta00270	Cysteine and methionine metabolism	2
nta04148	Efferocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

100193574

100382646

103635880

8082485

8068978

4339434

4324698

4326389

123070046

123064344

123078499

123443820

123448494

100839993

100834495

844340

100796971

100792594

100779103

101247414

101264103

103836036

100256571

7478385

18094746

25491383

107944310

107951897

121206098

106366560

106353351

106382305

102597201

102601682

102612593

107783779

107801981

107799517

5724110

The preparation time of this page was 0.5 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	2	3	3	2	2	1	3	2	1	1	2	1	3	3	2	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100193574 (zma-u.5 coexpression data)

Top 50 enrichment test to 100193574 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**