ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107944310	protein MLN51 homolog
ghi-r.1	107906501	protein MLN51 homolog
ghi-r.1	107913934	protein MLN51 homolog
ghi-r.1	107951897	protein MLN51 homolog
ath-u.5	AT1G80000	CASC3/Barentsz eIF4AIII binding protein
bra-r.6	103836036	protein MLN51 homolog
bna-r.1	106366560	protein MLN51 homolog
bna-r.1	106353351	protein MLN51 homolog
bna-r.1	106382305	protein MLN51 homolog
cit-r.1	102612593	protein MLN51 homolog
gma-u.5	100816837	protein MLN51 homolog
gma-u.5	100796971	protein MLN51 homolog
gma-u.5	100792594	protein MLN51 homolog
vvi-u.5	100256571	protein MLN51 homolog
ppo-u.5	18094746	protein MLN51 homolog
ppo-u.5	7478385	protein MLN51 homolog
mtr-u.5	25491383	protein MLN51 homolog
sly-u.5	101247414	protein MLN51 homolog
sly-u.5	101264103	protein MLN51 homolog
sot-r.1	102601682	protein CASC3
sot-r.1	102597201	uncharacterized LOC102597201
nta-r.1	107783779	protein MLN51 homolog
nta-r.1	107800827	protein MLN51 homolog
nta-r.1	107799517	protein MLN51 homolog
osa-u.5	4324698	uncharacterized LOC4324698
osa-u.5	4326389	protein MLN51 homolog
osa-u.5	4339434	protein MLN51 homolog
zma-u.5	103635880	CASC3/Barentsz eIF4AIII binding
zma-u.5	100382646	uncharacterized LOC100382646
zma-u.5	100193574	uncharacterized LOC100193574
tae-r.2	123061401	protein MLN51 homolog
tae-r.2	123078499	protein MLN51 homolog
tae-r.2	123070046	protein MLN51 homolog
hvu-r.1	123443820	protein MLN51 homolog
hvu-r.1	123448494	protein MLN51 homolog
sbi-r.1	8082485	uncharacterized LOC8082485
sbi-r.1	8068978	protein CASC3
bdi-r.1	100834495	protein MLN51 homolog
bdi-r.1	100839993	protein MLN51 homolog
cre-r.1	CHLRE_10g456700v5	uncharacterized protein

Top 50 coexpressed genes to 107944310 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107944310 (ghi-r.1 coexpression data)

CoexMap"107944310"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006397 [list] [network] mRNA processing

(513 genes)

IEA

GO CC

GO:0035145 [list] [network] exon-exon junction complex

(26 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(890 genes)

IEA

Protein

XP_016733621.1 [sequence] [blastp]
XP_016733622.1 [sequence] [blastp]
XP_016733623.1 [sequence] [blastp]
XP_040969383.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_016733621.1)
nucl 10	(predict for XP_016733622.1)
nucl 10	(predict for XP_016733623.1)
nucl 10	(predict for XP_040969383.1)

Subcellular
localization
TargetP

other 8	(predict for XP_016733621.1)
other 8	(predict for XP_016733622.1)
other 8	(predict for XP_016733623.1)
other 8	(predict for XP_040969383.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107944310	ghi-r.1 for 107906501	ghi-r.1 for 107913934	ghi-r.1 for 107951897	ath-u.5 for AT1G80000	bra-r.6 for 103836036	bna-r.1 for 106366560	bna-r.1 for 106353351	bna-r.1 for 106382305	cit-r.1 for 102612593	gma-u.5 for 100816837	gma-u.5 for 100796971	gma-u.5 for 100792594	vvi-u.5 for 100256571	ppo-u.5 for 18094746	ppo-u.5 for 7478385	mtr-u.5 for 25491383	sly-u.5 for 101247414	sly-u.5 for 101264103	sot-r.1 for 102601682	sot-r.1 for 102597201	nta-r.1 for 107783779	nta-r.1 for 107800827	nta-r.1 for 107799517	osa-u.5 for 4324698	osa-u.5 for 4326389	osa-u.5 for 4339434	zma-u.5 for 103635880	zma-u.5 for 100382646	zma-u.5 for 100193574	tae-r.2 for 123061401	tae-r.2 for 123078499	tae-r.2 for 123070046	hvu-r.1 for 123443820	hvu-r.1 for 123448494	sbi-r.1 for 8082485	sbi-r.1 for 8068978	bdi-r.1 for 100834495	bdi-r.1 for 100839993	cre-r.1 for CHLRE_10g456700v5

Ortholog

Ortholog ID: 3641

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

protein MLN51 homolog

CASC3/Barentsz eIF4AIII binding protein

protein MLN51 homolog

protein CASC3

uncharacterized LOC102597201

protein MLN51 homolog

uncharacterized LOC4324698

protein MLN51 homolog

CASC3/Barentsz eIF4AIII binding

uncharacterized LOC100382646

uncharacterized LOC100193574

protein MLN51 homolog

uncharacterized LOC8082485

protein CASC3

protein MLN51 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi03015	mRNA surveillance pathway	3
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03250	Viral life cycle - HIV-1	3
sly03015	mRNA surveillance pathway	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	4
nta00970	Aminoacyl-tRNA biosynthesis	2
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03015	mRNA surveillance pathway	4
nta03250	Viral life cycle - HIV-1	4
nta00270	Cysteine and methionine metabolism	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	4
nta00970	Aminoacyl-tRNA biosynthesis	2
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	3
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	4
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00020	Citrate cycle (TCA cycle)	2
bdi00785	Lipoic acid metabolism	2
bdi01200	Carbon metabolism	2
bdi01210	2-Oxocarboxylic acid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107944310

107951897

121206098

844340

103836036

106366560

106353351

106382305

102612593

100796971

100792594

100779103

100256571

18094746

7478385

25491383

101247414

101264103

102601682

102597201

107783779

107799517

107801981

4324698

4326389

4339434

103635880

100382646

100193574

123078499

123070046

123064344

123443820

123448494

8082485

8068978

100834495

100839993

5724110

The preparation time of this page was 0.1 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	1	3	1	3	1	2	1	2	2	3	3	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107944310 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107944310 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**