ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100824321	single-stranded DNA-binding protein WHY1, chloroplastic
bdi-r.1	100825843	single-stranded DNA-binding protein WHY2, mitochondrial
tae-r.2	123088030	single-stranded DNA-binding protein WHY1, chloroplastic
tae-r.2	123132347	single-stranded DNA-binding protein WHY2, mitochondrial
tae-r.2	123136394	single-stranded DNA-binding protein WHY2, mitochondrial
hvu-r.1	123401117	single-stranded DNA-binding protein WHY2, mitochondrial
hvu-r.1	123410098	single-stranded DNA-binding protein WHY1, chloroplastic-like
osa-u.5	4340109	single-stranded DNA-binding protein WHY1, chloroplastic
osa-u.5	4328365	single-stranded DNA-binding protein WHY2, mitochondrial
zma-u.5	100286229	uncharacterized LOC100286229
sbi-r.1	8068770	single-stranded DNA-binding protein WHY1, chloroplastic
sbi-r.1	8074659	single-stranded DNA-binding protein WHY2, mitochondrial
ath-u.5	WHY3	ssDNA-binding transcriptional regulator
ath-u.5	WHY1	ssDNA-binding transcriptional regulator
ath-u.5	ATWHY2	WHIRLY 2
gma-u.5	100817863	single-stranded DNA-binding protein WHY2, mitochondrial
gma-u.5	100797370	single-stranded DNA-binding protein WHY1, chloroplastic
gma-u.5	100789252	single-stranded DNA-binding protein WHY1, chloroplastic
sly-u.5	101252048	mtDNA-binding protein WHIRLY2-like
sly-u.5	WHY1	DNA-binding protein WHY1
bra-r.6	103836074	single-stranded DNA-binding protein WHY1, chloroplastic
bra-r.6	103831651	single-stranded DNA-binding protein WHY2, mitochondrial
bra-r.6	103827509	single-stranded DNA-binding protein WHY3, chloroplastic
vvi-u.5	100253653	single-stranded DNA-binding protein WHY1, chloroplastic
vvi-u.5	100258449	single-stranded DNA-binding protein WHY2, mitochondrial
ppo-u.5	7459041	single-stranded DNA-binding protein WHY1, chloroplastic
ppo-u.5	7483546	single-stranded DNA-binding protein WHY2, mitochondrial
ppo-u.5	7457857	single-stranded DNA-binding protein WHY1, chloroplastic
mtr-u.5	11413967	single-stranded DNA-binding protein WHY1, chloroplastic
mtr-u.5	11433338	single-stranded DNA-binding protein WHY2, mitochondrial
mtr-u.5	25502758	single-stranded DNA-binding protein WHY1, chloroplastic
ghi-r.1	107894079	single-stranded DNA-binding protein WHY1, chloroplastic
ghi-r.1	107928250	single-stranded DNA-binding protein WHY2, mitochondrial
ghi-r.1	107920217	single-stranded DNA-binding protein WHY1, chloroplastic
bna-r.1	106369337	single-stranded DNA-binding protein WHY3, chloroplastic
bna-r.1	106354135	single-stranded DNA-binding protein WHY2, mitochondrial
bna-r.1	106402754	single-stranded DNA-binding protein WHY2, mitochondrial
sot-r.1	102577630	Why2 protein
sot-r.1	102577544	DNA-binding protein p24
cit-r.1	102613455	single-stranded DNA-binding protein WHY2, mitochondrial
cit-r.1	102610089	single-stranded DNA-binding protein WHY1, chloroplastic
nta-r.1	107767802	single-stranded DNA-binding protein WHY2, mitochondrial-like
nta-r.1	107828401	single-stranded DNA-binding protein WHY2, mitochondrial
nta-r.1	107825932	single-stranded DNA-binding protein WHY2, mitochondrial
cre-r.1	CHLRE_02g091550v5	uncharacterized protein

Top 50 coexpressed genes to 100824321 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100824321 (bdi-r.1 coexpression data)

CoexMap"100824321"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006952 [list] [network] defense response	(348 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1579 genes)	IEA

GO CC

GO MF

GO:0003697 [list] [network] single-stranded DNA binding

(65 genes)

IEA

Protein

XP_003557198.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9

(predict for XP_003557198.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_003557198.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100824321	bdi-r.1 for 100825843	tae-r.2 for 123088030	tae-r.2 for 123132347	tae-r.2 for 123136394	hvu-r.1 for 123401117	hvu-r.1 for 123410098	osa-u.5 for 4340109	osa-u.5 for 4328365	zma-u.5 for 100286229	sbi-r.1 for 8068770	sbi-r.1 for 8074659	ath-u.5 for WHY3	ath-u.5 for WHY1	ath-u.5 for ATWHY2	gma-u.5 for 100817863	gma-u.5 for 100797370	gma-u.5 for 100789252	sly-u.5 for 101252048	sly-u.5 for WHY1	bra-r.6 for 103836074	bra-r.6 for 103831651	bra-r.6 for 103827509	vvi-u.5 for 100253653	vvi-u.5 for 100258449	ppo-u.5 for 7459041	ppo-u.5 for 7483546	ppo-u.5 for 7457857	mtr-u.5 for 11413967	mtr-u.5 for 11433338	mtr-u.5 for 25502758	ghi-r.1 for 107894079	ghi-r.1 for 107928250	ghi-r.1 for 107920217	bna-r.1 for 106369337	bna-r.1 for 106354135	bna-r.1 for 106402754	sot-r.1 for 102577630	sot-r.1 for 102577544	cit-r.1 for 102613455	cit-r.1 for 102610089	nta-r.1 for 107767802	nta-r.1 for 107828401	nta-r.1 for 107825932	cre-r.1 for CHLRE_02g091550v5

Ortholog

Ortholog ID: 2528

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

WHY3

WHY1

ATWHY2

WHY1

Function^*

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY1, chloroplastic-like

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

uncharacterized LOC100286229

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

ssDNA-binding transcriptional regulator

WHIRLY 2

single-stranded DNA-binding protein WHY1, chloroplastic

mtDNA-binding protein WHIRLY2-like

DNA-binding protein WHY1

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY3, chloroplastic

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY3, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY3, chloroplastic-like

Why2 protein

DNA-binding protein p24

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY1, chloroplastic

single-stranded DNA-binding protein WHY2, mitochondrial

single-stranded DNA-binding protein WHY1, chloroplastic-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	3
bdi00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00261	Monobactam biosynthesis	2
tae00300	Lysine biosynthesis	2
tae01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa03030	DNA replication	2
osa03410	Base excision repair	2
osa03082	ATP-dependent chromatin remodeling	2
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00340	Histidine metabolism	2
ath00350	Tyrosine metabolism	2
ath00360	Phenylalanine metabolism	2
ath00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ath00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	6
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00061	Fatty acid biosynthesis	2
gma00620	Pyruvate metabolism	2
gma00640	Propanoate metabolism	2
gma01200	Carbon metabolism	2
gma01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00061	Fatty acid biosynthesis	3
gma01212	Fatty acid metabolism	3
gma00620	Pyruvate metabolism	2
gma00640	Propanoate metabolism	2
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04146	Peroxisome	3
bra00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00860	Porphyrin metabolism	2
vvi01240	Biosynthesis of cofactors	2
vvi01210	2-Oxocarboxylic acid metabolism	2
vvi01230	Biosynthesis of amino acids	2
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00240	Pyrimidine metabolism	2
ppo01232	Nucleotide metabolism	2
ppo01240	Biosynthesis of cofactors	2
ppo01230	Biosynthesis of amino acids	2
ppo03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	3
ppo00300	Lysine biosynthesis	2
ppo00470	D-Amino acid metabolism	2
ppo01230	Biosynthesis of amino acids	2
ppo00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	3
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	4
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	6
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	4
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	5
nta03040	Spliceosome	3
nta03013	Nucleocytoplasmic transport	2
nta03030	DNA replication	2
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	11
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03040	Spliceosome	2
nta00260	Glycine, serine and threonine metabolism	2
nta00261	Monobactam biosynthesis	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

100824321

100825843

123088030

123136394

123150714

123401117

123410098

4340109

4328365

100286229

8068770

8074659

814803

838003

843467

100789252

100775220

100804480

101252048

101258558

103836074

103831651

103827509

100253653

100258449

7459041

7483546

7457857

11413967

11433338

25502758

107894079

107920217

107909129

106369337

106402754

106407445

102577630

102577544

102613455

102610089

107828401

107825932

107778020

5727487

The preparation time of this page was 0.2 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	1	2	3	3	2	3	2	3	3	3	3	2	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100824321 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100824321 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**