Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   WHY3   ssDNA-binding transcriptional regulator 
 ath-r.7   WHY3   ssDNA-binding transcriptional regulator 
 ath-m.9   WHY3   ssDNA-binding transcriptional regulator 
 ath-e.2   WHY3   ssDNA-binding transcriptional regulator 
 ath-m.4.bio   WHY3   ssDNA-binding transcriptional regulator 
 ath-m.4.hor   WHY3   ssDNA-binding transcriptional regulator 
 ath-m.4.lig   WHY3   ssDNA-binding transcriptional regulator 
 ath-m.4.str   WHY3   ssDNA-binding transcriptional regulator 
 ath-m.4.tis   WHY3   ssDNA-binding transcriptional regulator 
 ath-u.5   WHY1   ssDNA-binding transcriptional regulator 
 ath-u.5   ATWHY2   WHIRLY 2 
 bra-r.6   103831651   single-stranded DNA-binding protein WHY2, mitochondrial 
 bra-r.6   103827509   single-stranded DNA-binding protein WHY3, chloroplastic 
 bra-r.6   103836074   single-stranded DNA-binding protein WHY1, chloroplastic 
 bna-r.1   106407445   single-stranded DNA-binding protein WHY3, chloroplastic-like 
 bna-r.1   106402754   single-stranded DNA-binding protein WHY2, mitochondrial 
 bna-r.1   106382328   single-stranded DNA-binding protein WHY1, chloroplastic 
 ghi-r.1   107920217   single-stranded DNA-binding protein WHY1, chloroplastic 
 ghi-r.1   107928250   single-stranded DNA-binding protein WHY2, mitochondrial 
 ghi-r.1   107894079   single-stranded DNA-binding protein WHY1, chloroplastic 
 cit-r.1   102613455   single-stranded DNA-binding protein WHY2, mitochondrial 
 cit-r.1   102610089   single-stranded DNA-binding protein WHY1, chloroplastic 
 gma-u.5   100527314   single-stranded DNA-bindig protein WHY2-like protein 
 gma-u.5   100775220   single-stranded DNA-binding protein WHY1, chloroplastic 
 gma-u.5   100789252   single-stranded DNA-binding protein WHY1, chloroplastic 
 vvi-u.5   100258449   single-stranded DNA-binding protein WHY2, mitochondrial 
 vvi-u.5   100253653   single-stranded DNA-binding protein WHY1, chloroplastic 
 ppo-u.5   7457857   single-stranded DNA-binding protein WHY1, chloroplastic 
 ppo-u.5   7459041   single-stranded DNA-binding protein WHY1, chloroplastic 
 ppo-u.5   7483546   single-stranded DNA-binding protein WHY2, mitochondrial 
 mtr-u.5   25502758   single-stranded DNA-binding protein WHY1, chloroplastic 
 mtr-u.5   11433338   single-stranded DNA-binding protein WHY2, mitochondrial 
 mtr-u.5   11413967   single-stranded DNA-binding protein WHY1, chloroplastic 
 sly-u.5   101252048   mtDNA-binding protein WHIRLY2-like 
 sly-u.5   WHY1   DNA-binding protein WHY1 
 sot-r.1   102577544   DNA-binding protein p24 
 sot-r.1   102577630   Why2 protein 
 nta-r.1   107828401   single-stranded DNA-binding protein WHY2, mitochondrial 
 nta-r.1   107825932   single-stranded DNA-binding protein WHY2, mitochondrial 
 nta-r.1   107778020   single-stranded DNA-binding protein WHY1, chloroplastic-like 
 osa-u.5   4340109   single-stranded DNA-binding protein WHY1, chloroplastic 
 osa-u.5   4328365   single-stranded DNA-binding protein WHY2, mitochondrial 
 zma-u.5   100286229   uncharacterized LOC100286229 
 tae-r.2   123167715   single-stranded DNA-binding protein WHY1, chloroplastic 
 tae-r.2   123088030   single-stranded DNA-binding protein WHY1, chloroplastic 
 tae-r.2   123132347   single-stranded DNA-binding protein WHY2, mitochondrial 
 hvu-r.1   123401117   single-stranded DNA-binding protein WHY2, mitochondrial 
 hvu-r.1   123410098   single-stranded DNA-binding protein WHY1, chloroplastic-like 
 sbi-r.1   8074659   single-stranded DNA-binding protein WHY2, mitochondrial 
 sbi-r.1   8068770   single-stranded DNA-binding protein WHY1, chloroplastic 
 bdi-r.1   100824321   single-stranded DNA-binding protein WHY1, chloroplastic 
 bdi-r.1   100825843   single-stranded DNA-binding protein WHY2, mitochondrial 
 cre-r.1   CHLRE_02g091550v5   uncharacterized protein 

close


Top 50 coexpressed genes to WHY3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to WHY3 (ath-u.5 coexpression data)

CoexMap"814803"


athWHY3 | Entrez gene ID : 814803      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 2 3 3 2 2 3 2 1 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006281 [list] [network] DNA repair  (203 genes)  IMP  
GO:0006952 [list] [network] defense response  (1016 genes)  TAS  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0003697 [list] [network] single-stranded DNA binding  (37 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA ISS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_178377.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  vacu 1  (predict for NP_178377.2)
Subcellular
localization
TargetP
chlo 6  (predict for NP_178377.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
WHY3
ath-r.7
for
WHY3
ath-m.9
for
WHY3
ath-e.2
for
WHY3
ath-m.4.bio
for
WHY3
ath-m.4.hor
for
WHY3
ath-m.4.lig
for
WHY3
ath-m.4.str
for
WHY3
ath-m.4.tis
for
WHY3
ath-u.5
for
WHY1
ath-u.5
for
ATWHY2
bra-r.6
for
103831651
bra-r.6
for
103827509
bra-r.6
for
103836074
bna-r.1
for
106407445
bna-r.1
for
106402754
bna-r.1
for
106382328
ghi-r.1
for
107920217
ghi-r.1
for
107928250
ghi-r.1
for
107894079
cit-r.1
for
102613455
cit-r.1
for
102610089
gma-u.5
for
100527314
gma-u.5
for
100775220
gma-u.5
for
100789252
vvi-u.5
for
100258449
vvi-u.5
for
100253653
ppo-u.5
for
7457857
ppo-u.5
for
7459041
ppo-u.5
for
7483546
mtr-u.5
for
25502758
mtr-u.5
for
11433338
mtr-u.5
for
11413967
sly-u.5
for
101252048
sly-u.5
for
WHY1
sot-r.1
for
102577544
sot-r.1
for
102577630
nta-r.1
for
107828401
nta-r.1
for
107825932
nta-r.1
for
107778020
osa-u.5
for
4340109
osa-u.5
for
4328365
zma-u.5
for
100286229
tae-r.2
for
123167715
tae-r.2
for
123088030
tae-r.2
for
123132347
hvu-r.1
for
123401117
hvu-r.1
for
123410098
sbi-r.1
for
8074659
sbi-r.1
for
8068770
bdi-r.1
for
100824321
bdi-r.1
for
100825843
cre-r.1
for
CHLRE_02g091550v5


Ortholog ID: 2528
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol WHY3 WHY1 ATWHY2 LOC103831651 LOC103827509 LOC103836074 LOC106407445 LOC106402754 LOC106369337 LOC107920217 LOC107894079 LOC107909129 LOC102613455 LOC102610089 LOC100775220 LOC100789252 LOC100804480 LOC100258449 LOC100253653 LOC7457857 LOC7459041 LOC7483546 LOC25502758 LOC11433338 LOC11413967 LOC101252048 WHY1 LOC102577544 LOC102577630 LOC107828401 LOC107825932 LOC107778020 LOC4340109 LOC4328365 LOC100286229 LOC123088030 LOC123150714 LOC123136394 LOC123401117 LOC123410098 LOC8074659 LOC8068770 LOC100824321 LOC100825843 CHLRE_02g091550v5
Function* ssDNA-binding transcriptional regulator ssDNA-binding transcriptional regulator WHIRLY 2 single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY3, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY3, chloroplastic-like single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY3, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic mtDNA-binding protein WHIRLY2-like DNA-binding protein WHY1 DNA-binding protein p24 Why2 protein single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic-like single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial uncharacterized LOC100286229 single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic-like single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00340 Histidine metabolism 2
ath00350 Tyrosine metabolism 2
ath00360 Phenylalanine metabolism 2
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ath00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 3
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma00620 Pyruvate metabolism 2
gma00640 Propanoate metabolism 2
gma01200 Carbon metabolism 2
gma01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 3
gma01212 Fatty acid metabolism 3
gma00620 Pyruvate metabolism 2
gma00640 Propanoate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi01240 Biosynthesis of cofactors 2
vvi01210 2-Oxocarboxylic acid metabolism 2
vvi01230 Biosynthesis of amino acids 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo01230 Biosynthesis of amino acids 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 3
ppo00300 Lysine biosynthesis 2
ppo00470 D-Amino acid metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03040 Spliceosome 2
nta00260 Glycine, serine and threonine metabolism 2
nta00261 Monobactam biosynthesis 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03082 ATP-dependent chromatin remodeling 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00261 Monobactam biosynthesis 2
tae00300 Lysine biosynthesis 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814803 838003 843467 103831651 103827509 103836074 106407445 106402754 106369337 107920217 107894079 107909129 102613455 102610089 100775220 100789252 100804480 100258449 100253653 7457857 7459041 7483546 25502758 11433338 11413967 101252048 101258558 102577544 102577630 107828401 107825932 107778020 4340109 4328365 100286229 123088030 123150714 123136394 123401117 123410098 8074659 8068770 100824321 100825843 5727487
The preparation time of this page was 2.8 [sec].