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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100829409   DNA polymerase epsilon catalytic subunit A 
 tae-r.2   123078194   DNA polymerase epsilon catalytic subunit A 
 tae-r.2   123180924   DNA polymerase epsilon catalytic subunit A 
 tae-r.2   123042280   DNA polymerase epsilon catalytic subunit A 
 hvu-r.1   123429570   DNA polymerase epsilon catalytic subunit A-like 
 osa-u.5   4329458   DNA polymerase epsilon catalytic subunit A 
 zma-u.5   103627197   DNA polymerase epsilon catalytic subunit A 
 sbi-r.1   8056089   DNA polymerase epsilon catalytic subunit A 
 ath-u.5   TIL1   DNA polymerase epsilon catalytic subunit 
 gma-u.5   100812003   DNA polymerase epsilon catalytic subunit A 
 gma-u.5   100778115   DNA polymerase epsilon catalytic subunit A-like 
 sly-u.5   101253967   DNA polymerase epsilon catalytic subunit A-like 
 bra-r.6   103871570   DNA polymerase epsilon catalytic subunit A 
 vvi-u.5   100241432   DNA polymerase epsilon catalytic subunit A 
 ppo-u.5   18097958   DNA polymerase epsilon catalytic subunit A-like 
 mtr-u.5   11445193   DNA polymerase epsilon catalytic subunit A 
 ghi-r.1   107959376   DNA polymerase epsilon catalytic subunit A 
 ghi-r.1   107943981   DNA polymerase epsilon catalytic subunit A 
 bna-r.1   106413546   DNA polymerase epsilon catalytic subunit A 
 bna-r.1   106346351   DNA polymerase epsilon catalytic subunit A 
 sot-r.1   102599922   DNA polymerase epsilon catalytic subunit A-like 
 cit-r.1   102608212   DNA polymerase epsilon catalytic subunit A-like 
 nta-r.1   107775468   DNA polymerase epsilon catalytic subunit A 
 nta-r.1   107791916   DNA polymerase epsilon catalytic subunit A 
 cre-r.1   CHLRE_03g179961v5   uncharacterized protein 

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Top 50 coexpressed genes to 100829409 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100829409 (bdi-r.1 coexpression data)

CoexMap"100829409"


bdiLOC100829409 | Entrez gene ID : 100829409      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03030 [list] [network] DNA replication (49 genes)
bdi03410 [list] [network] Base excision repair (50 genes)
bdi03420 [list] [network] Nucleotide excision repair (85 genes)
GO BP
GO:0006287 [list] [network] base-excision repair, gap-filling  (2 genes)  IEA  
GO:0045004 [list] [network] DNA replication proofreading  (2 genes)  IEA  
GO:0006297 [list] [network] nucleotide-excision repair, DNA gap filling  (4 genes)  IEA  
GO:0006272 [list] [network] leading strand elongation  (6 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (126 genes)  IEA  
GO:0000278 [list] [network] mitotic cell cycle  (173 genes)  IEA  
GO CC
GO:0008622 [list] [network] epsilon DNA polymerase complex  (3 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2880 genes)  IEA  
GO MF
GO:0008310 [list] [network] single-stranded DNA 3'-5' DNA exonuclease activity  (1 genes)  IEA  
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (21 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (707 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1744 genes)  IEA  
GO:0000166 [list] [network] nucleotide binding  (2702 genes)  IEA  
Protein XP_010235462.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  mito 3  (predict for XP_010235462.1)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for XP_010235462.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100829409
tae-r.2
for
123078194
tae-r.2
for
123180924
tae-r.2
for
123042280
hvu-r.1
for
123429570
osa-u.5
for
4329458
zma-u.5
for
103627197
sbi-r.1
for
8056089
ath-u.5
for
TIL1
gma-u.5
for
100812003
gma-u.5
for
100778115
sly-u.5
for
101253967
bra-r.6
for
103871570
vvi-u.5
for
100241432
ppo-u.5
for
18097958
mtr-u.5
for
11445193
ghi-r.1
for
107959376
ghi-r.1
for
107943981
bna-r.1
for
106413546
bna-r.1
for
106346351
sot-r.1
for
102599922
cit-r.1
for
102608212
nta-r.1
for
107775468
nta-r.1
for
107791916
cre-r.1
for
CHLRE_03g179961v5


Ortholog ID: 9400
Species bdi tae tae tae hvu osa zma sbi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC100829409 LOC123078194 LOC123180924 LOC123042280 LOC123429570 LOC4329458 LOC103627197 LOC8056089 TIL1 LOC100812003 LOC100778115 LOC101253967 LOC103871570 LOC100241432 LOC18097958 LOC11445193 LOC107959376 LOC107943981 LOC106413546 LOC106346351 LOC102599922 LOC102608212 LOC107775468 LOC107791916 CHLRE_03g179961v5
Function* DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 9
tae00270 Cysteine and methionine metabolism 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 7
tae00270 Cysteine and methionine metabolism 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 3
osa00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 3
zma03430 Mismatch repair 3
zma03030 DNA replication 3
zma03410 Base excision repair 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 6
sbi03410 Base excision repair 3
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03440 Homologous recombination 4
ath03410 Base excision repair 3
ath03430 Mismatch repair 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma03440 Homologous recombination 4
gma03430 Mismatch repair 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 6
sly03410 Base excision repair 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03460 Fanconi anemia pathway 2
bra03030 DNA replication 2
bra03440 Homologous recombination 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03440 Homologous recombination 4
vvi03410 Base excision repair 3
vvi03420 Nucleotide excision repair 3
vvi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 11
ppo03420 Nucleotide excision repair 3
ppo03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 10
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
bna00052 Galactose metabolism 2
bna00511 Other glycan degradation 2
bna00531 Glycosaminoglycan degradation 2
bna00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
bna00052 Galactose metabolism 2
bna00511 Other glycan degradation 2
bna00531 Glycosaminoglycan degradation 2
bna00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03460 Fanconi anemia pathway 4
sot03440 Homologous recombination 4
sot03030 DNA replication 4
sot00270 Cysteine and methionine metabolism 3
sot03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 9
cit03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
cre03410 Base excision repair 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100829409 123078194 123180924 123042280 123429570 4329458 103627197 8056089 837346 100812003 100778115 101253967 103871570 100241432 18097958 11445193 107959376 107943981 106413546 106346351 102599922 102608212 107775468 107791916 5728795
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